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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACAGATGGTGTTCAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTGgtaatttggaattcagcaagaaggaattgtaacttgctttcagtttccatttgggttttcaatttggaattgtttgtttatcctttttcag

Basic information

species Vitis vinifera
transcript Vv18s0122g00680.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349832496|gb|FQ421057.1|FQ421057
EST:     CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTG                         AGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
genomic: CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTGgtaatttgga ... cctttttcagAGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
EST: gi|351012854|gb|FQ430417.1|FQ430417
EST:     CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTG                         AGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
genomic: CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTGgtaatttgga ... cctttttcagAGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
EST: gi|351028617|gb|FQ446290.1|FQ446290
EST:     CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTG                         AGGTGCCAGAGGATTTCAAGGTTTGCTCAGATGAGGTCAACAAGTTCAAAA
genomic: CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTGgtaatttgga ... cctttttcagAGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
EST: gi|349827467|gb|FQ422335.1|FQ422335
EST:     CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTG                         AGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
genomic: CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTGgtaatttgga ... cctttttcagAGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
EST: gi|351029607|gb|FQ427447.1|FQ427447
EST:     CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTG                         AGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
genomic: CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTGgtaatttgga ... cctttttcagAGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
EST: gi|351014409|gb|FQ437411.1|FQ437411
EST:     CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTG                         AGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
genomic: CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTGgtaatttgga ... cctttttcagAGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
EST: gi|349832962|gb|FQ423084.1|FQ423084
EST:     CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTG                         AGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
genomic: CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTGgtaatttgga ... cctttttcagAGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
EST: gi|349826098|gb|FQ415903.1|FQ415903
EST:     CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTG                         AGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA
genomic: CAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTGGCCGATACTGgtaatttgga ... cctttttcagAGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAA