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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTATGAGCAATTCATTGCAACTGGAGGAGTCCCTAATCAATCTGATGCTTTTACCATAAATGGTCAGCCTGGTGATCTATATCCATGCTCAAAATCAGgtatatataaacctccttactgatatatactgagaacctagctaggtaagttagctcttcagtaatggttgtag

Basic information

species Vitis vinifera
transcript Vv18s0122g00390.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g00390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G27480.1 (Glycine max), 5'ss of exon 4
GTTTATGAGCAATTCATTGCAACTGGAGGAGTCCCTAATCAATCTGATGCTTTTACCATAAATGGTCAGCCTGGTGATCTATATCCATGCTCAAAATCAGgtatatataaacctccttactgatatatactga---gaacctagctaggta-agtta---gctcttcagtaatggttgtag-------------------
|| |||||| ||||  |   || |||||||  ||| ||| ||||||||||| | || ||||||||||| ||||||||||| ||||| ||||| |||||||||| | || ||     |   | | ||  |   |   || | || |  |  | | |||   | | || |  || |   | |                    
GTGTATGAGGAATTTCTCAGAAATGGAGGATCCCCAAATGAATCTGATGCTATCACAATAAATGGTCAACCTGGTGATCTCTATCCTTGCTCCAAATCAGgtaaacatcaatactttattttacattcatcaacacgagcatatcatgtcataattatatgtttttgatcaaggaaagaaaaactaggagtaactatata

upper sequence: Vv18s0122g00390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G08380.1 (Glycine max), 5'ss of exon 5
--GTTTATGAGCAATTCATTGCAACTGGAGGAGTCCCTAATCAATCTGATGCTTTTACCATAAATGGTCAGCCTGGTGATCTATATCCATGCTCAAAATCAGgtatatataaacctccttactgatatatactgagaacctagctaggtaagttagctcttcagtaatggttgtag--------------------------
  || |||||| ||||  |   ||||||||||| ||| ||| | ||||||||| | || ||||||||||| ||||||||||| ||| | |||  ||||||||||| | || ||  |  |   | | ||  |   | |         | |    ||  | |    | ||| |    |                          
ATGTCTATGAGGAATTTCTCAGAACTGGAGGAGCCCCAAATGATTCTGATGCTATCACTATAAATGGTCAACCTGGTGATCTTTATGCTTGC--AAAATCAGgtagacatcaatattttattttacattcatcaacacaagcatatgatgccataattatatgtttatgctcaaggaaagaaaaactaggagtaaatctacg