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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGACCACAACTATGAGTAGCACTGCAGCATTAAAAGCTGGTCTGCGTGGAAAAGCTTTGAGAATAACTCATTACTATCGAGATTCACTCTGgcaagtataggggaaactggatttgattgcaattaatgatttaaattgttctatgattgatattctgcttgggaattattcttgcag

Basic information

species Vitis vinifera
transcript Vv18s0089g00360.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0089g00360.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G37040.1 (Glycine max), 5'ss of exon 4
GTTGGGACCACAACTATGAGTAGCACTGCAGCATTAAAAGCTGGTCTGCGTGGAAAAGCTTTGAGAATAACTCATTACTATCGAGATTCACTCTGgcaagtatagg-ggaaactggatttgattgcaattaatgatttaaattgttctatgattgatattctgcttgggaattattcttgcag
|||||||  || || ||||| ||| ||| |||||||||||||||  | |||||||| ||  ||||||||||||||| |||||| ||||  || |||||||| |||   || ||||    || |     ||  | ||| |                                            
GTTGGGAGTACCACAATGAGCAGCGCTGAAGCATTAAAAGCTGGATTACGTGGAAAGGCACTGAGAATAACTCATTGCTATCGTGATTTGCTTTGGCAAgtttagctagagactg--cctggtgatcctt--ttattcag-------------------------------------------