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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGAAGACTGTGGTAGTGAAGAATTTGCCTTATACTGATATGCGGAGAGTCGGAAAAATACCCAAACTTCTGGCACATCGGCTTTTTCCTTCTGCAAGgtaagaattagatcaattagtatatgggaattatcttctagtaacctctttcagataactttgtttagatagtttttattgtttgttacactcttctgca...

Basic information

species Vitis vinifera
transcript Vv18s0072g01020.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g09170.1 (Oryza sativa), 5'ss of exon 4
TATGGAAGACTGTGGTAGTGAAGAATTTGCCTTATACTGATATGCGGAGAGTCGGAAAAATACCCAAACTTCTGGCACATCGGCTTTTTCCTTCTGCAAGgtaagaattagatcaattagtatatgggaatt--atcttctagtaacctctttcagataactttgtttagatagttt-ttattgtttgttacactcttctgca
|||||||||   |  |  | |||||| ||||||||| ||| |||||||||||||| |||||||| ||| ||||||||||||| ||||| || ||  |||||||| ||| |      ||| |||||||   ||  |  || |  |  || | || |    ||  |||   | |  |     | | |   |   | || || |  
TATGGAAGATCATATTGATTAAGAATATGCCTTATAATGACATGCGGAGAGTCGGCAAAATACCGAAATTTCTGGCACATCGTCTTTTCCCATCATCAAGgtaaaaatgaatgttctta-tatatggtggttgtacttttttttttccacattgaatccacactgtcatgtttatgggccaatatcattcttaatcctcag--

upper sequence: Vv18s0072g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G35990.1 (Glycine max), 5'ss of exon 6
TATGGAAGACTGTGGTAGTGAAGAATTTGCCTTATACTGATATGCGGAGAGTCGGAAAAATACCCAAACTTCTGGCACATCGGCTTTTTCCTTCTGCAAGgtaagaattagatcaattagtatatgggaattatcttctagtaacctctttcagataactttgtttagatagtttttattgtttgttacactcttctgca-------
| |||||    ||||||||||||||| | || |||  ||||||||||||||| || |||||||| || ||  || | ||||| |||||||||| |||||||| ||| | | || |  ||  | |||     | |  | | | |    |      ||   ||  |   | ||  |  ||       ||| || |     ||       
TTTGGAAATTAGTGGTAGTGAAGAATCTACCCTATGATGATATGCGGAGAGTGGGCAAAATACCTAAGCTATTGCCGCATCGACTTTTTCCTTTTGCAAGgtgagactgatatga--taaaacatg-----tgttcttttgaatttgccagagtatgctttaatcatggtaactgctaagtggcattaaacaccaagacagatatgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698378|gb|EE075812.1|EE075812
EST:     GTCGGAAAAATACCCAAACTTCTGGCACATCGGCTTTTTCCTTCTGCAAG                         GTATTCAATTTGGTTGGATAGCAAATTGCGTCTCCAACTTGACCCTCTTCT
genomic: GTCGGAAAAATACCCAAACTTCTGGCACATCGGCTTTTTCCTTCTGCAAGgtaagaatta ... ttcttctcagGTATTCAATTTGGTTGGATAGCAAATTGCGTCTCCAACTTGACCCTCTTCT