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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag

Basic information

species Vitis vinifera
transcript Vv18s0072g01000.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os12g08170.1 (Oryza sativa), 5'ss of exon 4
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag
| || || ||| ||||||||||||| |||||||| || ||  | ||||| |||||  ||||||||||||||||||| |   ||  ||    ||| ||  |||    ||      |||||  |||   |   | |     ||    |  | ||  || |||      |||||                                
GCACCTTTACTATTTCAAACCTTGGTATGTTTGGAGTTGACAGATTTGATGCAATCTTGCCACCTGGAACTgtaag-acgaaatttccatcttttaatttctattatc------attcaatgct---gcttgctgcatgatttatgttattatctt-tattgctgaaaacag-------------------------------

upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G165176_T01 (Zea mays), 5'ss of exon 6
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgaggggg--actaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag
| || || ||||| || || ||||| |||||||| || ||| ||||||| ||||| |||||||||||||||||||| ||  | | |   | |||   |  |    || |     || ||  |||     |     || |||  | |||  |||||||                                                
GCACGTTTACTCTCTCGAATCTTGGTATGTTTGGAGTTGATAGGTTTGATGCAATACTGCCACCTGGAACTgtaag-atgcacagttt-attttattctccatttctatttttcatgcagtgctgtataccttactgaaatatgtgggttactaaatacag--------------------------------------------

upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G036534_T02 (Zea mays), 5'ss of exon 5
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag
| || || |||||||| || ||||| |||||||| || ||| |||| || ||||| ||||||||||||||||||||       |   | |||||       |  | ||| ||   ||  ||  ||   |||  | || |         ||| ||   |||| || | |    ||  |                          
GCACCTTTACTCTTTCGAATCTTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaag-------atggacaattta-----ttttattctcca---tttctattttaatgcaattctgcat---accctactgaa--atatccgggttactgaaaacag-------------------------

upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G35960.1 (Glycine max), 5'ss of exon 5
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacata-attatgttgatttgcatgttttttctgcag
||||||||||||| || || || |||||||||||||| ||||| ||||| || |||||||||||||||||||| ||| ||| | ||| |   |  ||  |  | |       | ||| |    |||   ||  ||     | ||        ||  ||    ||| | ||  | || ||  |  | || || | ||| ||| ||
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgtttta-ctc-gtgctcaaatatggcaa------gagattgactagttgttccaattagaagtttag--------aacagtgatgggaaacacgaatatgatccttctctggatatattt-ctgtag

upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G31630.1 (Glycine max), 5'ss of exon 5
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag
||||||||||||| || || || ||||||||||| || ||||| ||||| || |||||||||||||||||||| ||| ||| |  |  |  ||  ||  |  | |       | ||| |    |||   ||  || | |  | |  ||   |        || || ||  || ||| | | |||||   ||| |         
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttttactt--gtgttcaaatatggcaa------gagattgactagttgttccaatta-gaacagtgatgggtca--------cacgaaaatgatcattctatggatttatttgtgtag-------

upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G34430.1 (Arabidopsis thaliana), 5'ss of exon 4
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag
|||| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||| || |||||||| || |||  ||  ||      |||   | | |  | | |    | ||  || |||||      ||||   |   |   | ||| |    | |||||||       |  |||   |||  | |  |   || ||
GTACCTTCACTCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAACAgttagtgcttttacc-----tttatgcgtgt--atttt----agtttgtatcttggt-----tatgtcttttagcctaataattatgctaaggataacagctcattggttttcttgtctttgatcaatgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383970|gb|EC948379.1|EC948379
EST:     TTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACT                         GGAGCAATCATGGCGGTTGGAGCATCAGAACCAACCGTTGTTGCCACCAAG
genomic: TTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtattt ... ttttctgcagGGAGCAATCATGGCGGTTGGAGCATCAGAACCAACCGTTGTTGCCACCAAG