Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag

Basic information

species Vitis vinifera
transcript Vv18s0072g01000.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os12g08170.1 (Oryza sativa), 5'ss of exon 4
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag
| || || ||| ||||||||||||| |||||||| || || | ||||| ||||| ||||||||||||||||||| | || || ||| || ||| || ||||| ||| | | | || | | || || ||| |||||
GCACCTTTACTATTTCAAACCTTGGTATGTTTGGAGTTGACAGATTTGATGCAATCTTGCCACCTGGAACTgtaag-acgaaatttccatcttttaatttctattatc------attcaatgct---gcttgctgcatgatttatgttattatctt-tattgctgaaaacag-------------------------------

upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G165176_T01 (Zea mays), 5'ss of exon 6
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgaggggg--actaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag
| || || ||||| || || ||||| |||||||| || ||| ||||||| ||||| |||||||||||||||||||| || | | | | ||| | | || | || || ||| | || ||| | ||| |||||||
GCACGTTTACTCTCTCGAATCTTGGTATGTTTGGAGTTGATAGGTTTGATGCAATACTGCCACCTGGAACTgtaag-atgcacagttt-attttattctccatttctatttttcatgcagtgctgtataccttactgaaatatgtgggttactaaatacag--------------------------------------------

upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G036534_T02 (Zea mays), 5'ss of exon 5
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag
| || || |||||||| || ||||| |||||||| || ||| |||| || ||||| |||||||||||||||||||| | | ||||| | | ||| || || || || ||| | || | ||| || |||| || | | || |
GCACCTTTACTCTTTCGAATCTTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaag-------atggacaattta-----ttttattctcca---tttctattttaatgcaattctgcat---accctactgaa--atatccgggttactgaaaacag-------------------------

upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G35960.1 (Glycine max), 5'ss of exon 5
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacata-attatgttgatttgcatgttttttctgcag
||||||||||||| || || || |||||||||||||| ||||| ||||| || |||||||||||||||||||| ||| ||| | ||| | | || | | | | ||| | ||| || || | || || || ||| | || | || || | | || || | ||| ||| ||
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgtttta-ctc-gtgctcaaatatggcaa------gagattgactagttgttccaattagaagtttag--------aacagtgatgggaaacacgaatatgatccttctctggatatattt-ctgtag

upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G31630.1 (Glycine max), 5'ss of exon 5
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag
||||||||||||| || || || ||||||||||| || ||||| ||||| || |||||||||||||||||||| ||| ||| | | | || || | | | | ||| | ||| || || | | | | || | || || || || ||| | | ||||| ||| |
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttttactt--gtgttcaaatatggcaa------gagattgactagttgttccaatta-gaacagtgatgggtca--------cacgaaaatgatcattctatggatttatttgtgtag-------

upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G34430.1 (Arabidopsis thaliana), 5'ss of exon 4
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag
|||| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||| || |||||||| || ||| || || ||| | | | | | | | || || ||||| |||| | | | ||| | | ||||||| | ||| ||| | | | || ||
GTACCTTCACTCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAACAgttagtgcttttacc-----tttatgcgtgt--atttt----agtttgtatcttggt-----tatgtcttttagcctaataattatgctaaggataacagctcattggttttcttgtctttgatcaatgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383970|gb|EC948379.1|EC948379
EST:     TTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACT                         GGAGCAATCATGGCGGTTGGAGCATCAGAACCAACCGTTGTTGCCACCAAG
genomic: TTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtattt ... ttttctgcagGGAGCAATCATGGCGGTTGGAGCATCAGAACCAACCGTTGTTGCCACCAAG