Sequence
atgc intronic sequence ATGC exonic sequenceGCCGTCGATTACGAGGTGCACTTGCAGAAGATTCAGGCATTGAGTCTGATTATATTCTTGCCGGATGTGGTGCAGATGAGCTCATTGATTTGATTATGCGgttagaaatggaagattttgtgtttacttgagctttaaaattatattgatctttggtttgtagtttctatttaattctaccaattcccaattgtttattttgtttattattgcattgacctctattacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g00940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g47940.1 (Oryza sativa), 5'ss of exon 3
GCCGTCGATTACGAGGTGCACTTGCAGAAGATTCAGGCATTGAGTCTGATTATATTCTTGCCGGATGTGGTGCAGATGAGCTCATTGATTTGATTATGCGgttagaa-atggaagattttgtgtttacttgagctttaaaattatattgatct--ttggtttgtagtttc-tatttaattctaccaattcccaattgtttattttgtttattattgcattgacctctattacag
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GCCGTCAGTTGCGTGCTGCTCTTGCTGAAGATTCTGGTCTTGAATCTGAGTACATACTTGCTGGATGTGGTGCAGATGAATTAATTGATTTAATAATGAGgttagcatgtagcttgttttatacctgctttttgcacgagatttttgtatccgagttgagtaatagcctagttttttttttaataaaaaagtaatagcctagtttgaatggtgaaaatgcag------------
upper sequence: Vv18s0072g00940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G27220.1 (Glycine max), 5'ss of exon 4
GCCGTCGATTACGAGGTGCACTTGCAGAAGATTCAGGCATTGAGTCTGATTATATTCTTGCCGGATGTGGTGCAGATGAGCTCATTGATTTGATTATGCGgttagaaatggaagattttgtgttt-acttgagctttaaaattatattgatctttggtttgtagtttctatttaattctaccaattcccaattgtttattttgtttattattgcattgacctctattacag
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GCCGCAGATTGCGCGCAGCTCTTGCCCATGATTCAGGCCTTGAAGCTGAATATATTCTTGCAGGGTGTGGTGCAGATGAGCTTATTGATTTGATCATGCGgttagaaccaataccttatgtattttagataagcctcaaattctttctcttcat--gctaattgtcatcat--agctacgacaatcacca-tcatacatgcttctcatatatactccag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857670|gb|DT006725.1|DT006725EST: TATATTCTTGCCGGATGTGGTGCAGATGAGCTCATTGATTTGATTATGCG ATGTGTACTGGATCCTGG
genomic: TATATTCTTGCCGGATGTGGTGCAGATGAGCTCATTGATTTGATTATGCGgttagaaatg ... tctattacagATGTGTACTGGATCCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCGTCGATTACGAGGTGCACTTGCAGAAGATTCAGGCATTGAGTCTGATTATATTCTTGCCGGATGTGGTGCAGATGAGCTCATTGATTTGATTATGCGgttagaaatggaagattttgtgtttacttgagctttaaaattatattgatctttggtttgtagtttctatttaattctaccaattcccaattgtttattttgtttattattgcattgacctctattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA