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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTAGTGGACGCTACTTGCCTTCTGAACAAAGAGTCAAGGAAGTCATTACAGCTTTTACAAGGTCTCAAGGGAACTCAACTAATCATTCCAAGAATGGgtaaaatattattcaaaaggccttctattgcttccatttcccaaaataaaattttaaacaaatttgcgtgcccttttgtaattaatgagaatgatcctcctttgatttcag

Basic information

species Vitis vinifera
transcript Vv18s0072g00830.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g00830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G27290.2 (Glycine max), 5'ss of exon 4
ATGGTAGTGGACGCTACTTGCCTTCTGAACAAAGAGTCAAGGAAGTCATTACAGCTTTTACAAGGTCTCAAGGGAACTCAACTAATCATTCCAAGAATGGgtaaaatattattcaaaaggccttctattgcttccatttcccaaaataaaattttaaacaaatttgcgtgcccttttgtaattaatgagaatgatcctcctttgatttcag
||| | |||||  |||| |  ||| ||||||| || ||||||||  |  | ||||||||||||||||||||||| ||||   |||||||||||||| |||||||  | || |   |||  | || | |  |||    ||       ||  |||| |||  ||   | ||     ||| |||  ||    | | |||    |   || ||||
ATGATTGTGGATACTACATCTCTTGTGAACAAGGAATCAAGGAAAGCTCTGCAGCTTTTACAAGGTCTCAAGGGGACTCGGTTAATCATTCCAAGATTGGgtaatgtgtttt---aaaaacattatgtgccttgttctt-------tactatttcaaatgaa---gtgttgttgtttctaacaaaccc-agttatcactatgcaatgtcag

upper sequence: Vv18s0072g00830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G35930.2 (Glycine max), 5'ss of exon 9
ATGGTAGTGGACGCTACTTGCCTTCTGAACAAAGAGTCAAGGAAGTCATTACAGCTTTTACAAGGTCTCAAGGGAACTCAACTAATCATTCCAAGAATGGgtaaaatattattcaaaaggccttctattgcttccatttcccaaaataaaattttaaacaaatttgcgtgcccttttgtaattaatgagaatgatcctcctttgatttcag
||||| || ||| || |||  ||||||||||| |||||||||||  | || |||||| ||||||| |||||||| ||||   |||||||||||||  |||||||    ||  | | | | | |  ||||   |   |||      ||   |  |        ||| |       |    || |  |    |   ||   |||| || ||||
ATGGTTGTAGACACTGCTTCTCTTCTGAACAAGGAGTCAAGGAAAGCTTTGCAGCTTCTACAAGGCCTCAAGGGGACTCGTTTAATCATTCCAAGTTTGGgtaatgagtt--ttagatgccttgttattatctttgttt----ggattggaagtgctgttgtttttcacagaagtcaaaaactggttctcacactcacactttaatgtcag

upper sequence: Vv18s0072g00830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G08210.1 (Glycine max), 5'ss of exon 4
ATGGTAGTGGACGCTACTTGCCTTCTGAACAAAGAGTCAAGGAAGTCATTACAGCTTTTACAAGGTCTCAAGGGAACTCAACTAATCATTCCAAGAATGGgtaaaatattattcaaaaggccttctattgcttccatttcccaaaataaaattttaaacaaatttgcgtgcccttttgtaattaatgagaatgatcctcctttgatttcag
||| | |||||  ||||||  ||| | ||||| || ||||||||  |  | |||||||||||||||||||| || ||||   |||||||||||||| |||||||  | || |    ||    || | |  |||    ||       ||  |||| |||  || | | ||     ||| |||  ||||  | | |||   ||   || ||||
ATGATTGTGGATACTACTTCTCTTGTAAACAAGGAATCAAGGAAAGCTATGCAGCTTTTACAAGGTCTCAAAGGGACTCGGTTAATCATTCCAAGATTGGgtaatgtgtttt----aatatattatgtgccttgttctt-------tactatttcaaatgaagtggtgt---tgtttctaacaaatgc-agttatcactctgcaatgtcag

upper sequence: Vv18s0072g00830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G31660.1 (Glycine max), 5'ss of exon 7
ATGGTAGTGGACGCTACTTGCCTTCTGAACAAAGAGTCAAGGAAGTCATTACAGCTTTTACAAGGTCTCAAGGGAACTCAACTAATCATTCCAAGAATGGgtaaaatattat---tca--aaaggccttctattgcttccatttcccaaaataaaattttaaacaaatttgcgtgcccttttgtaattaatg--agaatgatcctcctttgatttcag
||||| || ||| || |||  ||||||||||| |||||||||||  | || |||||| |||||||||||||||| || |   ||| |||||||||  | |||||    || |   |||  | | ||||| |||    |   |||      ||   |  |        ||| |       |    || |         |  | | | |||| || ||||
ATGGTTGTAGACACTGCTTCTCTTCTGAACAAGGAGTCAAGGAAAGCTTTGCAGCTTCTACAAGGTCTCAAGGGGACCCGTTTAACCATTCCAAGTTTAGgtaacgagttttagatcattatatgccttgtataatctttgttt----ggattggaagtgctgttgtttttcacaaaagtcaaaaactggctctcacactaacattctttaatgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110406599|gb|EC972178.1|EC972178
EST:     ACAGCTTTTACAAGGTCTCAAGGGAACTCAACTAATCATTCCAAGAATGG                         TCATTAGGGAGCTGGATTGCCTGAAGCGACGAGGTAGTTTGTTTAGAAGAA
genomic: ACAGCTTTTACAAGGTCTCAAGGGAACTCAACTAATCATTCCAAGAATGGgtaaaatatt ... ttgatttcagTCATTAGGGAGCTGGATTGCCTGAAGCGACGAGGTAGTTTGTTTAGAAGAA