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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGTGAGAATAGGGTCAAAGAAGATGAAACCGGACATAAACACTGTACGGGGCAGTATTTTGACTACTGGTCTTGTGTTGATAAATGTgtaagttctcttcacaagaaatatgaaaaataggagtacctaggtagtatattctatatagttaaagaacttatattgttaatttacattattgccttactcatctgctgaaattggtatttggaaatgcag

Basic information

species Vitis vinifera
transcript Vv18s0072g00810.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g00810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G01090.2 (Arabidopsis thaliana), 5'ss of exon 4
GCATGTGAGAATAGGGTCAAAGAAGATGAAACCGGACATAAACACTGTACGGGGCAGTATTTTGACTACTGGTCTTGTGTTGATAAATGTgtaagt-tctcttcacaagaaatatgaaaaataggagtacctaggtagtatattctatatagttaaagaacttatattgttaatttacattattgccttactcatctgctgaaattggtatttggaaatgcag
                || |||| |||||  | || || ||||| || || ||||| |||||||| ||||||  ||||||||| |||||||||||| | |     |      | || | |     |     | |  |   ||   |    |    |   ||||  | |  || ||| | ||   |  |||   ||    |||  | | |  ||   |      
---------------ATCCAAGATGATGAGTCTGGCCACAAACATTGCACTGGGCAATATTTTGATTACTGGCATTGTGTTGACAAATGTGTAAGTGTGTGAGTGCTGTTTTTCTgtatacacctaaagtttcgcgaaactaaaatgacaaagacagctacttggagt-ctatttttctttccagggttat--ataaaatgatgtggatgcttaacat-----