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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAGCCCAGGCTGGATCGCTGCTTTTATTAGGCCCCTTTCTGGATTATTGGTTGACAAACAAAAGAGTTGACATGTACCAATATAACACAGCATCCTTGgtaagtactacagcaatccatgaccatcacttttatacctggatatgataatttttaaaccttggcccaactttatgtgcatgtggatttgtacatggtt...

Basic information

species Vitis vinifera
transcript Vv18s0072g00080.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 5
CCCAGCCCAGGCTGGATCGCTGCTTTTATTAGGCCCCTTTCTGGATTATTGGTTGACAAACAAAAGAGTTGACATGTACCAATATAACACAGCATCCTTGgtaagtactacagcaatccatgaccatcacttttatacctggatatgataatttttaaaccttggcccaactt-tatgtgcatgtggatttgtacatggtt-------
 || || ||||||| ||| || || |||||||| || ||||| |||||||||||||||||||||||||||||||  ||  | || ||||| || || ||||||||| ||  |  |||  |  |  ||    ||     ||  ||    |  || |      |||    ||    ||| ||||| || |  | |||||| |        
ACCTGCACAGGCTGCATCACTACTGTTATTAGGACCTTTTCTAGATTATTGGTTGACAAACAAAAGAGTTGACAGATATGACTACAACACTGCCTCGTTGgtaagttctgga-taatgaaaaaatat----ttagggactacatcctttgtttctc---ttttgagataatgagtatatgcatatgtagatttacatgatacgtataa

upper sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 4
CCCAGCCCAGGCTGGATCGCTGCTTTTATTAGGCCCCTTTCTGGATTATTGGTTGACAAACAAAAGAGTTGACATGTACCAATATAACACAGCATCCTTGgtaagtactacagcaatccatgaccatcacttttat--acctggatatgataatttttaaaccttggcccaactttatgtgcatgtggatttgtacatggtt
 || || ||||||| ||| || || |||||||| || ||| | |||||||||||||||||||||||||||||||  ||  | || ||||| || || ||||||||| ||  |  |||  |  |  ||   | || |  |  |  ||||        |    | || |  |   |||| |   ||| | || || | |||   
ACCTGCACAGGCTGCATCACTACTGTTATTAGGACCTTTTTTAGATTATTGGTTGACAAACAAAAGAGTTGACAGATATGACTACAACACTGCCTCGTTGgtaagttctgga-taatggaaaaatattgatgttgttaaattaaatatttagggactacgccatttgttctctttta-gaaaatgagtatatgcatatgtag

upper sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 4
CCCAGCCCAGGCTGGATCGCTGCTTTTATTAGGCCCCTTTCTGGATTATTGGTTGACAAACAAAAGAGTTGACATGTACCAATATAACACAGCATCCTTGgtaagtactacagca-atccatgaccatcacttttatacctggatatgataatttttaaaccttggcccaactttatgtgcatgtggatttgtacatggtt
 || || || |||| ||| || ||||| ||||||||  |||| || ||||||||||||||||| ||||||||||  ||    || ||  |||  || ||||||||| ||  |  | |  ||| | ||   || ||| ||         | |   |  |    | |      ||          || |||  ||     | |
ACCTGCACAAGCTGCATCACTACTTTTGTTAGGCCCTGTTCTAGACTATTGGTTGACAAACAATAGAGTTGACAGATATGCTTACAATGCAGGTTCTTTGgtaagtgctggaaaacaaacat-atcaatgctattaaactcaacgcataaaccctacatgattcgttttctctgagaaaatgagtagatgcgtttgcagat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110393433|gb|EC958668.1|EC958668
EST:     GGTTGACAAACAAAAGAGTTGACATGTACCAATATAACACAGCATCCTTG                         ATATTTATAATCCTTTCATGTACTATCGCGGTAGGGACCAACCTCAGCCAG
genomic: GGTTGACAAACAAAAGAGTTGACATGTACCAATATAACACAGCATCCTTGgtaagtacta ... gcttttgcagATATTTATAATCCTTTCATGTACTATCGCGGTAGGGACCAACCTCAGCCAG
EST: gi|161718335|gb|FC066295.1|FC066295
EST:     GGTTGACAAACAAAAGAGTTGACATGTACCAATATAACACAGCATCCTTG                         ATATTTATAATCCTTTCATGTACTATCGCGGTAGGGACCAACCTCAGCCAG
genomic: GGTTGACAAACAAAAGAGTTGACATGTACCAATATAACACAGCATCCTTGgtaagtacta ... gcttttgcagATATTTATAATCCTTTCATGTACTATCGCGGTAGGGACCAACCTCAGCCAG