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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGAATGAGTTGAAAGATCAGGTCTGCTCATCTTGGTTTGCTCCAGTTGGTTCTGCCAGTGATTACCCGCTTTTGTCCAAGTGGGTTATTTATGGGGAGgtaccattagaagccattctgagttttattatgtctgttagttctcattttttttgtcacttatcgttattttttttgctttctcag

Basic information

species Vitis vinifera
transcript Vv18s0001g11060.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g01540.1 (Oryza sativa), 5'ss of exon 4
CATGAATGAGTTGAAAGATCAGGTCTGCTCATCTTGGTTTGCTCCAGTTGGTTCTGCCAGTGATTACCCGCTTTTGTCCAAGTGGGTTATTTATGGGGAGgtaccattagaagccattc--tgagttttattatgtctgtt---agttctcattttttttgtcacttatcgttattttttttgctttctcag
 ||||||||||| ||||||||| | || ||||||||||||||||| ||||| ||||| |||||||| || ||| | ||||| |||||||| ||||||||||||||  | |   | ||||    | | ||  | |   ||||   || |  || | |   ||| ||   || ||  |  | ||  | || |||
TATGAATGAGTTAAAAGATCAGATATGTTCATCTTGGTTTGCTCCGGTTGGATCTGCTAGTGATTATCCTCTTCTATCCAAATGGGTTATCTATGGGGAGgtaccgctggcctcgattcatctattctttcttttcatgtttccagctgacaatatccatgttacacttctttgatcatgttattctc-cag

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g04210.1 (Oryza sativa), 5'ss of exon 4
CATGAATGAGTTGAAAGATCAGGTCTGCTCATCTTGGTTTGCTCCAGTTGGTTCTGCCAGTGATTACCCGCTTTTGTCCAAGTGGGTTATTTATGGGGAGgtaccattagaagccattctgagttttattatgtctgttagttctcattttttttgtcacttatcgttattttttttgctttctcag
|||| || |||| ||||| ||| | |||||||| ||||||||||| ||||| ||||| || |||||||| ||  | || || ||||  |||||||  || ||     ||| |    |||  |  ||   | | ||| ||  || |  |||  ||| |  |||||  || || | ||||||       
CATGCATAAGTTTAAAGAGCAGATTTGCTCATCCTGGTTTGCTCCGGTTGGCTCTGCTAGCGATTACCCTCTCCTATCTAAATGGGCAATTTATGAAGAAgt-----tagtattgcttc--accttctgtgtttctcttgatttttttttagtttatt-cttattttttttatgtttgctccag---

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G018356_T01 (Zea mays), 5'ss of exon 3
CATGAATGAGTTGAAAGATCAGGTCTGCTCATCTTGGTTTGCTCCAGTTGGTTCTGCCAGTGATTACCCGCTTTTGTCCAAGTGGGTTATTTATGGGGAGgtaccattagaagccattctgagttt-tattatgtctgttagttctcattttttttgtca-cttatcgttattttttttgctttctcag
 ||| || | || ||||| ||| | ||||| || ||||||||||||||||||||||| ||||||||||| ||| | || || ||||  |||||||| || ||   | || |   ||   |  |||| ||||  |    |||  | |  ||||  |||| |  ||||  |||  ||| |  ||   ||||
TATGCATAAATTTAAAGAACAGATTTGCTCCTCCTGGTTTGCTCCAGTTGGTTCTGCTAGTGATTACCCTCTTCTCTCTAAATGGGCCATTTATGGAGAAgt--tagtatactgcaccttttgtttgtatttagatgattatctttgcttttccttgtaagtttattcttacatttgt--ctggttcag

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G135839_T01 (Zea mays), 5'ss of exon 4
CATGAATGAGTTGAAAGATCAGGTCTGCTCATCTTGGTTTGCTCCAGTTGGTTCTGCCAGTGATTACCCGCTTTTGTCCAAGTGGGTTATTTATGGGGAGgtaccattagaagccattctgagt-tttattatgtctgttagttctcattttttttgtcacttatcgttattttttttg-------ctttctcag-
 |||||| ||||||||||| || | || || |||||||||||||| ||||| ||||| ||||| || ||  || || | || |||||||| || ||||||||||     |   |   | |     | |||||| |||  | |  ||   ||    || ||   ||  |    || ||||        ||||||   
TATGAATCAGTTGAAAGATGAGATATGTTCGTCTTGGTTTGCTCCTGTTGGATCTGCAAGTGACTATCCTATTCTGGCAAAATGGGTTATCTACGGGGAGgtactgcctgcttctcctttattcatctattatttctagtcgcactttcttaaggtgacatccatgttgcacttctttgatcatgtttttctccag

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 3
CATGAATGAGTTGAAAGATCAGGTCTGCTCATCTTGGTTTGCTCCAGTTGGTTCTGCCAGTGATTACCCGCTTTTGTCCAAGTGGGTTATTTATGGGGAGgtacc--attagaagccat-----tctgagttttattatgt-ctgttagttctcat-tttttttgtcacttatcgttattttttttgctt--tctcag-----------------
 ||||| || ||||| || ||||||||||||||||||||||| |||||||| ||||| |||||||| || || ||||| |||||||||||||||||||||||||   ||   | |  ||     | ||| || ||   | | |||||     |||| | | | ||||  || | ||| ||||  | | ||  |  ||                  
GATGAACGAATTGAAGGACCAGGTCTGCTCATCTTGGTTTGCACCAGTTGGATCTGCAAGTGATTATCCTCTCTTGTCAAAGTGGGTTATTTATGGGGAGgtacttaatataatgatataattatttgatttatacagtctactgttgtaattcatatatctatgtccattctggttcttttcatggtttgatgccaaaattatttttgtattag

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G36310.1 (Glycine max), 5'ss of exon 3
CATGAATGAGTTGAAAGATCAGGTCTGCTCATCTTGGTTTGCTCCAGTTGGTTCTGCCAGTGATTACCCGCTTTTGTCCAAGTGGGTTATTTATGGGGAGgtacc--attagaagccattctgagttttattatgtctgttagttctcattttttttgtcacttatcgttatt-ttttttgctttctcag--------------------------
 ||||| || |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| || || ||||| ||||||||||||||||| |||||||   ||   | |  ||  | | ||   ||||| | || || | || |  ||  | ||  |   | || |  || ||| | |  |  |                          
GATGAACGAATTGAAAGACCAGGTTTGCTCATCTTGGTTTGCACCAGTTGGATCTGCAAGTGATTATCCTCTCTTGTCGAAGTGGGTTATTTATGGCGAGgtacttaatataatgatataattatttgatttatg-cagtcagctgtcgtaattcatatctatgtccattttggttctttacatggtttgatgccaaaattatttttatgtattag

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 4
CATGAATGAGTTGAAAGATCAGGTCTGCTCATCTTGGTTTGCTCCAGTTGGTTCTGCCAGTGATTACCCGCTTTTGTCCAAGTGGGTTATTTATGGGGAGgtaccattagaagccattctgagttttattatgtctgttagttctcattttttttgtcacttatcgttattttttttgctttctcag
 ||||||||| ||||||| || || || ||||| ||||||||||||||||| ||||| |||||||| || || || ||||| ||| | || || ||||||||| |  |       | | |   | | | ||||| |  |  |  |||   |||   |   ||    ||  |    |    ||  |||
TATGAATGAGCTGAAAGACCAAGTGTGTTCATCGTGGTTTGCTCCAGTTGGATCTGCAAGTGATTATCCACTGTTATCCAAATGGTTCATCTACGGGGAGgtatctcttctgtaaactttctttgtgaatatgttttatt-tgttcaccctttaaattttttcctattcctaccctgttatttgcag

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 3
CATGAATGAGTTGAAAGATCAGGTCTGCTCATCTTGGTTTGCTCCAGTTGGTTCTGCCAGTGATTACCCGCTTTTGTCCAAGTGGGTTATTTATGGGGAGgt--accattagaagccattctga-gttttattatgtc-tgttagttctcattttttttgtcacttat-cgttattttttttgctttctcag
|||  ||||| | | ||| || ||||||||||| ||||||||||| ||||| |||||  ||||||| ||  | |||||||| ||||| || |||||||||||       | |   |  || | |  || || | |||  |||  ||||| ||||      || ||  |   ||  |   |||   |   |||
CATTGATGAGCTAAGAGACCAAGTCTGCTCATCATGGTTTGCTCCTGTTGGATCTGCACGTGATTATCCATTATTGTCCAAATGGGTCATCTATGGGGAGgtcagggtctggcttctgttataacattctaatttgttgtgtacgttcttatttgaccactctctgttgtattcctaccttttaatctacag