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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAAGAGAATGTCCAAAAACAGAAGGCCCTGGGAAAAAAACAGGGCATAGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctcaccttcactctcttcttttgctttttatttttttattataaacttgaatgttgattctccaattgttttcacataattcttagtcagtgtc...

Basic information

species Vitis vinifera
transcript Vv18s0001g09710.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877699|gb|DT026754.1|DT026754
EST:     AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT                         TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: gi|71880779|gb|DT029834.1|DT029834
EST:     AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT                         TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: gi|71859464|gb|DT008519.1|DT008519
EST:     AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT                         TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: gi|27584092|gb|CB006787.1|CB006787
EST:     AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAGGCCAAAAAATT                         TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: gi|30303537|gb|CB980331.1|CB980331
EST:     AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT                         TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: gi|71880624|gb|DT029679.1|DT029679
EST:     AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT                         TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: gi|71877948|gb|DT027003.1|DT027003
EST:     AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT                         TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: gi|71879457|gb|DT028512.1|DT028512
EST:     AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT                         TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
EST: gi|71878762|gb|DT027817.1|DT027817
EST:     AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATT                         TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG
genomic: AGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctca ... atgtgtgcagTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTGAAGAGAATGTCCAAAAACAGAAGGCCCTGGGAAAAAAACAGGGCATAGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTgtactgctcaccttcactctcttcttttgctttttatttttttattataaacttgaatgttgattctccaattgttttcacataattcttagtcagtgtc

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