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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag

Basic information

species Vitis vinifera
transcript Vv18s0001g06290.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 5'ss of exon 4
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||| | ||| |||| |||||  | ||  | ||||| || ||| | | |||      ||  |    || |   | ||   |   ||| ||    |||  | |||     |  |   |   |  |||||    |   |   ||                                                        
GGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGgtagatgtttaag---atgcttacatttg---aatggttatgtttcattttgcttt--gctggcaggtgttctaatgtga--atgttccatttttatactgacag----------------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 4
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatat-tagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagt-tagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|||||||| ||||| |||||||| || ||||||||||| || ||||| ||||||||||||||| | ||| |||| |||||  | ||  | || || || |||        ||   ||| | || | |||     | ||    ||| || |     | |  ||         |  || | | ||                                                                            
GGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaa---ggctctatttctattattgactttcggatattcatgcccttgctctgaccatattatgttacttgtatggcag----------------------------------------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G054136_T06 (Zea mays), 5'ss of exon 3
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|| ||||| ||||| |||||||| || |||||||||||||| |||||||||||||| ||||| || ||| ||||||||||| ||||  |||||||||| |||       | | |   |  || |    ||| |||  |  |     |||  | | | |     |||  |  || |    | ||  || ||   ||||       || | ||                                              
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgta------tagagacttcctatttacagtgtactctcagcaccatcttttactctgattcttatc-tgaacattcgatatca-attctgtagggact---ccctgcttcc----------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 3
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|| ||||| ||||| |||||||| || |||||||||||||| |||||||||||||| ||||| || ||| ||||||||||| ||||  |||||||||| |||       | | |   |  || |    ||| |||  |  |     |||  | | | |     |||  |  || |    | ||  || || |||                                                               
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgta------tagagacttcctatttacagtgtactctcagcaccatcttttactctgattcttatc-tgaacattcgatatca-attctg-tag---------------------------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 4
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|| ||||| ||||| |||||||| || |||||||||||||| |||||||||||||| ||||| || ||| ||||||||||| ||||  |||||||||| |||       | | |   |  ||      ||| |||  | ||     |||  | | | |     |||  |  || |    | ||  || || |||                                                               
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgta------tagagacttcctatgtccagtgtactctcaacaccatcttttactctgattcttatc-tgaacattcgatatca-attctg-tag---------------------------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 4
---------GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
         || ||||| ||||| |||||||| || |||||||| ||||| |||||||||||||| |||||  | ||| ||||||||||  | ||  ||||||| ||||||    | | |   |||| |   |  |  |                                                                                                                               
GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATgtgacaaacaaggcttcccaatgaagcaaggagttctgacttctggtcgtgtccgccttctgctccacagaggta---tatagactgtatctccattgtactc------------------------------------------------------------------------------------------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|| ||||| ||||| |||||||| || |||||||| ||||| |||||||||||||| |||||  | ||| ||||||||||  | ||  ||||||| ||||||    | | |   |||| |   |    || | || | ||||    |||  |  |   | |       |  || || ||      || || |||                                                               
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgta---tatagactgtatctccatt---gtactctcaacaccccctcttttacctgtggttcttatctgaacattt-gatatgaattgtg-tag---------------------------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G24630.1 (Glycine max), 5'ss of exon 4
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgt--tggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|| ||||| ||||||||||  || || |||||||| ||||| ||||||||||||||||||||||| || |||||||||||| | |||||||||||||||||| || || |  |  |   | | |||  || ||   ||      |    | ||   |||  || |||  | |    |     |||| |  | | |   || ||||                                                      
GGATATGTTTTCAAAATCACTGGTGGGTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgttttactgcctcaatgtattgttgttttggtttataaatat-cataattataattgattgctgttgat----ggcat-tgatacaactgccgtgttc-----------------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G08210.1 (Glycine max), 5'ss of exon 4
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|||||||| |||||||| |  ||||| || ||||||||||| || ||||||||||| |||||||| || |||||||||||| | |||||||| |||||||||  || | |  ||     ||  ||||  |    |||  |  | | | |||   |||               |||| |||||||   |   |     ||||| || |    |||  ||                                       
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctattctgaagccttt-tgttt-tctgttgattataaatacatcataatta-------------ttagtttgaagcat---tcattcaactcatgtgttttatatttggaat---------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 4
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|||||||| |||||||| |  ||||| |||||||| ||||| || |||||||||||||||||| | ||||||||||||||||| || ||||| || || |||       || ||      |||  ||  ||| ||         | | |  | |||  | |   |   |  |  |||        ||||  ||   | ||  |   ||    ||                                           
GGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgta------tgatg------tagctttaatgccctattttgttcttcctatattttctgcttagttctgtgcccttatgttttaatttttttaaatcaat--tccatttttgtg-------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G31840.3 (Glycine max), 5'ss of exon 3
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|| ||||| ||||||||||  || || |||||||| ||||| ||||| ||||||||||||||| | || |||||||||||| | || ||||||||||||||| ||       || | || |  | |   |  | ||        |  ||   |||||  || |||    |    || | ||||| |  | | |   ||||||| ||     | |     |                                     
GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtagg-----aatgttctactgct-tcaatctattg--------ttgttttggtttataattgattgatg----ttggcagcat-tgatccaactgccatgttctgc-atttggctgcgg-------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G31130.1 (Glycine max), 5'ss of exon 5
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|| ||||| |||||||| |  ||||| || ||||||||||| || ||||||||||| |||||||| || |||||||||||| | |||||||| |||||||||  || | |  ||     ||  |  |  |   ||||  |  | | | ||    |||               |||| |||||||   |   |     || || || |    |||   |                                       
GGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtatgtctattctgaagcctt--ttgtattttgctgattataaatacatcctaatta-------------ttagtttgaagcat---tcattcaactcacgtgttctatatttgaatt---------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 3
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggcca-gttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|||||||| |||||||| |  ||||| |||||||| ||||| ||||| ||||| ||||||||| | ||||||||||||||| | || ||||| || || |||  | | | | |   ||  |  | ||  ||  |  |||   ||   |||   ||     ||   |      |  ||  || | | ||     |   |||| |                                                       
GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgtagctttgatgcttttttttttgttc-aacc--tatatgttcggcttagttctgtgccctttttatattttaatctttttaaatcaaatccattt-------------------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G09330.1 (Glycine max), 5'ss of exon 2
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|| ||||| ||||||||||  || || |||||||| ||||| || |||||||||||||||||| |||| |||||  |||||  ||| |||||||| |||||| |   | |  ||     | | | ||  |  | |    | ||||      |  |||  |||  |||    | |     ||||| | ||      ||| | ||||  ||| |                                             
GGATATGTCTTCAAAATCACTGGTGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTAACACCTGGCTGTGTTCATCTTTTGCTCCACAGAGgtagaactgtaatgaagcttcaatttt--ttaatttgtgatcatttaacata--ttataatgtgtcatcatctgc----agcatttgttc----aaccctctttttgtgcat---------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|| || |||||||| ||||||||||| |||||||||||||| ||||||||||| || |||||  | ||||| || |||||  |||| ||||| ||  |||||      ||        |||  |     |  || |     | ||  ||||   ||||  |   ||   |    |||      || | || |   |   ||||| |                                                   
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattc-caccccattgataaaattatacagcttctctttttttca---ttaatct---tctgtgttttttatttatgtgatctggtt--attgtgtttag---------------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagt-tagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|| || || ||||| |||| ||| || || || |||||||| |||||||||||||||||||| || ||||| || |||||| | || ||||| ||  |||||                | ||    |  | |  |  |   || |  | ||  | ||  ||||||        || |    |  |||||||||           |||||   | || || | |||                                 
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgta---------------actaaacataataccttttcttacacttttgca--tctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtt---tcgtaatgggtgaacag-----------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S253_38V6.1 (Physcomitrella patens), 5'ss of exon 3
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggat-----cacggccagtta---gaagcatgttttgc-taggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag----------------------
|| ||||| ||||| |||||||||||||| |||||||| || ||||||||||||||||||||  | ||||  || |||||    ||| || | || ||||||  |    | |    | |   |||||||||   |||       |  |   |     | ||  ||     | | ||   |     | | || |  |||  | ||    ||   || |    ||   |   | |||| ||  |    ||    | |  |||  | |                       
GGGTATGTCTTCAAGATCATGGGAGGCTGCGACAAGCAGGGTTTCCCAATGAAGCAGGGAGTTCTCACTCAAGGCCGTGTGCAGCTCCTGATGCACAGAGgtatggcgatagatagacacgggtgttggtgtcatgaagtaggctagtctgaacgagacatttatgtcctcgctgctcctcttgtgcaacaagcgttgagtggggttgtggagtggtttgatgggctcagt-atgggtgcgaga-atttagttctcccttttgtaacgattattgtgtgttgttgcag

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttgg-------tggtatattagtgttggtgcactgaccac--cattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|| ||||| ||||| || |||||||| || |||||||| || ||||| ||||||||||||||  | || |  || |||||    |||||| | || ||||||  |  | |         |||||| |  | || | | || | | | |  || | | ||    |  |||  |      |     | |||| |  |||     | ||   ||   |  ||   || || |||  |       |||   ||| |  | | |   ||||
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagat-catttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgat--gcactcagtacggccgcgaggttat-gattttcatctgtaacgactcttgcct-gttgtcgcag

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatc--acggccagttagaa-gcatgttttgctaggac-catgttttgttgccttgtcatag--atgatggatgaaaactgttctagttttg--cttaagcag
|| || || ||||| || |||||||| ||||||||||| || ||||| ||||||||||| || || || |  || |||||    ||  || | ||  |||||      ||       |     |     |   |   | |    |      | ||   |||||||   || |   || |  | |||    |   ||  |  |  || ||| |     ||   |   || ||| |  |||    |   | |||||  |||  | ||
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
|||||||| ||||| ||||||||||| ||||||||| | || ||||| ||||||||||| ||  | |   |    |||||  | ||| || |  |  |||||        | || |   ||  | ||       |  ||  | ||| |||   ||| ||||   ||  | ||||                                                                                   
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaac---gatgcttcttttttctt------ttctccctctttcgttctgatttgagat---tcgtgaccag-----------------------------------------------------------------------------------

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ26393 (Selaginella moellendorffii), 5'ss of exon 3
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag
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GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaac---gatgcttcttttttctt------ttctccctctttcgttctgatttgagat---tcgtgaccag-----------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710093|gb|EE086127.1|EE086127
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110731210|gb|EE109174.1|EE109174
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110369359|gb|EC933517.1|EC933517
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|29782562|gb|CB347995.2|CB347995
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110724727|gb|EE100810.1|EE100810
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110694354|gb|EE071389.1|EE071389
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110701201|gb|EE078523.1|EE078523
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|30124734|gb|CB910073.1|CB910073
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110426639|gb|EC993054.1|EC993054
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110422092|gb|EC988404.1|EC988404
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|28962095|gb|CB341128.1|CB341128
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAAAGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110729833|gb|EE106221.1|EE106221
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|71858023|gb|DT007078.1|DT007078
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110698432|gb|EE075922.1|EE075922
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110730616|gb|EE107900.1|EE107900
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
EST: gi|110708627|gb|EE086388.1|EE086388
EST:     GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAG                         GAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA
genomic: GAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggttttt ... gcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGA