Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCCAGAAACAAGATCAGCACCATTGAAGGACTCAGAGAATTAACCCGATTGCGGGTGCTTGATCTCAGTTACAATCGGATCTCCCGAATTGGGCATGgtaattatcttcaccaaacacttgtttatgaacttggactttatagacatgttatttattttcaagatgaaatatttccaagagcaaactctattttaaacttaaaagacatgtagaattctaaaggtgactgtggactgcaatggtgtcag

Basic information

species Vitis vinifera
transcript Vv18s0001g05780.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g05780.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G10780.1 (Glycine max), 5'ss of exon 5
TTGTCCAGAAACAAGATCAGCACCATTGAAGGACTCAGAGAATTAACCCGATTGCGGGTGCTTGATCTCAGTTACAATCGGATCTCCCGAATTGGGCATGgtaattatcttcaccaaacacttgtttatgaacttggactttatagacatgttatttatt-ttcaagatgaaatatttccaagagcaaactctattttaaacttaaaagacatgtagaattctaaaggtgactgtggactgcaatggtgtcag
 |||| |||||||| |||||||||||||| || |||||||||||||||||  ||||||| |||||  | ||||| ||||| || ||  ||||||| || ||| | | |||  |      | |  |  ||| |       ||| ||    ||  |||| || | |    || | ||||| | | |  | ||  ||   | | |      |   | |                                      
CTGTCAAGAAACAAAATCAGCACCATTGAGGGCCTCAGAGAATTAACCCGGCTGCGGGTACTTGACTTAAGTTATAATCGCATTTCAAGAATTGGACAAGgttagtttctatattggttaatgctcaatgga-----ggtttttacttctggaatttcttatccttcgtgcagtattttctataa-atacaatacaattatccactgtgttttatcag-----------------------------------

upper sequence: Vv18s0001g05780.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G10940.1 (Glycine max), 5'ss of exon 3
TTGTCCAGAAACAAGATCAGCACCATTGAAGGACTCAGAGAATTAACCCGATTGCGGGTGCTTGATCTCAGTTACAATCGGATCTCCCGAATTGGGCATGgtaattatcttcaccaaacacttgtttatgaacttggactttatagacatgttatttattttcaagatgaaatatttccaagagcaaactctattttaaacttaaaagacatgtagaattctaaaggtgactgtggactgcaatggtgtcag
 |||| |||||||| |||||||| |||||||| || ||||||||||| ||  ||||||| |||||  | ||||| ||||| |||||  ||||||| || ||| | | |||       ||| | ||| ||| | |    ||  ||  |   | | || | ||      |||| |   |  |   |   | | | || ||||   ||    | ||  |  || ||   |                         
CTGTCAAGAAACAAAATCAGCACTATTGAAGGCCTTAGAGAATTAACACGGCTGCGGGTACTTGACTTAAGTTATAATCGCATCTCAAGAATTGGACAAGgtcagtttct-------acattggttgatgcagtgatgctcaatgaa---ggttttcacttct----tgaatttcctagacttgtgcagtattttctaaatacaattatc-tgccgtgttttatcag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714193|gb|FC062938.1|FC062938
EST:     ATTGCGGGTGCTTGATCTCAGTTACAATCGGATCTCCCGAATTGGGCATG                         GGTTGTCAAATTGTACGCTTATCAAGGAGCTCTATCTTGCGGGAAACAAGA
genomic: ATTGCGGGTGCTTGATCTCAGTTACAATCGGATCTCCCGAATTGGGCATGgtaattatct ... atggtgtcagGGTTGTCAAATTGTACGCTTATCAAGGAGCTCTATCTTGCGGGAAACAAGA