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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCCGACCATCGGCTGCACGCTCATTGGTGTTGAAGGAAAGCAAAGACATGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaatgttatgcgtgcctaaaaacaagtcatccacatctctctcggtagtagtttgggtgtttgaattgagatgtgcgcaaaggactaaatgaga...

Basic information

species Vitis vinifera
transcript Vv18s0001g05480.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351042370|gb|FQ442837.1|FQ442837
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|71890552|gb|DT039607.1|DT039607
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|351055304|gb|FQ441902.1|FQ441902
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|351025084|gb|FQ433501.1|FQ433501
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|349808206|gb|FQ403393.1|FQ403393
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCATGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|351052161|gb|FQ450731.1|FQ450731
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAN
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|351033213|gb|FQ461985.1|FQ461985
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGA
EST: gi|352795622|gb|FQ480210.1|FQ480210
EST:     TGGGAGAGCCTGCGCCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|351034181|gb|FQ463115.1|FQ463115
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|351016411|gb|FQ423838.1|FQ423838
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|351056465|gb|FQ454326.1|FQ454326
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|110703051|gb|EE079558.1|EE079558
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|110429233|gb|EC995723.1|EC995723
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGC
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGC
EST: gi|351022504|gb|FQ447026.1|FQ447026
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|349824984|gb|FQ406556.1|FQ406556
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|351022653|gb|FQ428562.1|FQ428562
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGC
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGC
EST: gi|351055621|gb|FQ452086.1|FQ452086
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACTGTGCTTAAN
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|351038942|gb|FQ457617.1|FQ457617
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|351034791|gb|FQ458148.1|FQ458148
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|351036728|gb|FQ457441.1|FQ457441
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA
EST: gi|351052900|gb|FQ453887.1|FQ453887
EST:     TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAAT                         CCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCCTGCTTAAA
genomic: TGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaat ... aaccttgtagCCTGCTGGAGGTCAGAGCAACATCATGTTTAGTGATGAGACCGTGCTTAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCCCGACCATCGGCTGCACGCTCATTGGTGTTGAAGGAAAGCAAAGACATGGGAGAGCCTGCACCACGTAATGTACGCACATCTGTCAAAGTTTCTAATgtgagtgaatgttatgcgtgcctaaaaacaagtcatccacatctctctcggtagtagtttgggtgtttgaattgagatgtgcgcaaaggactaaatgaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaagga