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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTCATTCCATAATTACAGAATTTGGTCATTCTTAGGCCTTATGATGACCACCTACACTTCTTGGTATCTAACCATTGCTTCCTTTATCCATGGGCAGgtatgtatttaccttaattagctgtattcatcacttagttttaatttcaaataattcccataatcccatcccccctttgatacattgatttatttattaagtaatcccatgctgatttgcttgtttgaag

Basic information

species Vitis vinifera
transcript Vv18s0001g03540.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G43150.2 (Glycine max), 5'ss of exon 5
TCCTTCATTCCATAATTACAGAATTTGGTCATTCTTAGGCCTTATGATGACCACCTACACTTCTTGGTATCTAACCATTGCTTCCTTTATCCATGGGCAGgtatgtatttaccttaattagctgtattcatcacttagttttaatttcaaataattcccataat--cccatcccccctttgatacattgatt-----tatttattaagtaatcccatgctgattt-------gcttgtttgaag
 ||||| ||||| ||||||||||| |||||||||||||||||  |||||||||| |||||| | |||||| | ||||| |||||| ||| |||||| ||||||   |    |  || ||||  |   ||| || | |   | || || ||  || ||  |||||      |  | | | ||||| |   |||     |    |||  ||  ||      | || |       | || | |||||
CCCTTCTTTCCACAATTACAGAATGTGGTCATTCTTAGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagc-ctcagca-tcatcataaaattaaagcaaatcatataatgattgctaacacatgtgatataagtattattgttgccaattttgtgttcttcaattaatattctgtgtgtttctctgaag

upper sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 5
TCCTTCATTCCATAATTACAGAATTTGGTCATTCTTAGGCCTTATGATGACCACCTACACTTCTTGGTATCTAACCATTGCTTCCTTTATCCATGGGCAGgtatgtatttaccttaattagctgtattcatcacttagttttaatttcaaataattcccataatcccatcccc-----cctttgatacattgat--ttat--ttattaagtaatcccatgctg-atttgcttgtttgaag------------
 ||||| ||||| || |||||||| ||||||||||| |||||  |||||||||| |||||| | |||||| | ||||| |||||| ||| |||||| ||||||   |    |  || ||||  |   ||| || | ||  | || || ||  || ||  ||||         |     | | ||||| | | |   ||||  ||  ||| || |    | ||  | ||  |  | ||               
CCCTTCTTTCCACAACTACAGAATCTGGTCATTCTTGGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagc-ctcaaca-tcagcataaaattaaagcaaatcaaataacaatgattgctaacacatgtgatataataagtattattgttgctaattatttgtgttcttcaattaatattctgtgtgtttctctaaag

upper sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G77690.1 (Arabidopsis thaliana), 5'ss of exon 4
TCCTTCATTCCATAATTACAGAATTTGGTCATTCTTAGGCCTTATGATGACCACCTACACTTCTTGGTATCTAACCATTGCTTCCTTTATCCATGGGCAGgta--tgtatttaccttaattagctgtattcatcacttagttttaatttcaaataattcccataatcccatcccccctttgatacattgatttatttattaagtaatcccatgctgatttgcttgtttgaag
|||||| ||||| ||||| ||||||||||||||| | || ||    |||||||| ||||||||||||||||| |||||||||||  |  | ||||| |||||   | || ||| |  || |   ||| || || | |      ||    || ||| | |   | ||           ||| ||| ||| |||| |    |||  ||                          
TCCTTCCTTCCACAATTATAGAATTTGGTCATTCCTCGGACTCGCTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCACTCCTTCATGGCCAGgtcattataattaacacaaatc-ttgttttgattattataagatatagacatatagtcctggttattgt------tgtttaatatatttatttttcatataaaaaag-------------------------