1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAGgcaagataagcactttgtatctttttctccttttagtctagtaatctaggtttcatttcccttgtttcttagatttagaatactaagattttgtttgaca...
species | Vitis vinifera |
transcript | Vv18s0001g03070.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAG GCATATGAAGCTCAAGAGCGAATGAAGCAACAAGTGGCGATTGAAAAAATAEST: gi|161711556|gb|FC059510.1|FC059510
genomic: GGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAGgcaagataag ... ttttgattagGCATATGAAGCGCAAGAGCGAATGAAGCAACAAGTGGCGATTGAAAAAATA
EST: AGATCCATTTTGTTTTGATCTCAAG GC-TATGAAGCTCAAGAGCGAATGAAGCAACAAGTGGCGATTGAAAAAATAEST: gi|351024543|gb|FQ426352.1|FQ426352
genomic: AGATCCATTTTGTTTTGATCTCAAGgcaagataag ... ttttgattagGCATATGAAGCGCAAGAGCGAATGAAGCAACAAGTGGCGATTGAAAAAATA
EST: GGTTACTGTCAACTTCGGGGCAGATCCCTTTTGTTTTGATCTCAAG GCATATGAAGCGCAAAACCGAATGEST: gi|351028513|gb|FQ444794.1|FQ444794
genomic: GGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAGgcaagataag ... ttttgattagGCATATGAAGCGCAAGAGCGAATG
EST: GGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAG GCATATGAAACGCAAGAGCGAAEST: gi|110422400|gb|EC988722.1|EC988722
genomic: GGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAGgcaagataag ... ttttgattagGCATATGAAGCGCAAGAGCGAA
EST: GGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAG GCATATGAAGCTCAAGAGCGAATGAAGCAACAAGTGGCGATTGAAAAAATA
genomic: GGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAGgcaagataag ... ttttgattagGCATATGAAGCGCAAGAGCGAATGAAGCAACAAGTGGCGATTGAAAAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAGgcaagataagcactttgtatctttttctccttttagtctagtaatctaggtttcatttcccttgtttcttagatttagaatactaagattttgtttgaca
- - - - - - - - - GCAGAT