1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTCAGTTCTGGGGTTTTGGCTTTCTGCCTCAACTTCTCCATCTTCTATGTGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAGgtgagctcccttaaatagaaaccatctctgaatactgttctctataatacatttattgatttaattgctataatgaatcatcatcctcggccatcctttt...
species | Vitis vinifera |
transcript | Vv18s0001g02970.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAG GTTGCAGTTGCTGTCATGGTTTCATGGCTTATATTCAGAAATCCAATCTCAEST: gi|110367070|gb|EC930991.1|EC930991
genomic: TGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAGgtgagctccc ... ttttgtacagGTTGCAGTTGCTGTCATGGTTTCATGGCTTATATTCAGAAATCCAATCTCA
EST: TGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAG GTTGCAGTTGCTGTCATGGTTTCATGGCTTATATTCAGAAATCCAATCTCAEST: gi|110395727|gb|EC961397.1|EC961397
genomic: TGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAGgtgagctccc ... ttttgtacagGTTGCAGTTGCTGTCATGGTTTCATGGCTTATATTCAGAAATCCAATCTCA
EST: TGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAG GTTGCAGTTGCTGTCATGGTTTCATGGCTTATATTCAGAAATCCAATCTCAEST: gi|110376542|gb|EC941603.1|EC941603
genomic: TGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAGgtgagctccc ... ttttgtacagGTTGCAGTTGCTGTCATGGTTTCATGGCTTATATTCAGAAATCCAATCTCA
EST: TGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAG GTTGCAGTTGCTGTCATGGTTTCATGGCTTATATTCAGAAATCCAATCTCAEST: gi|30137672|gb|CB923010.1|CB923010
genomic: TGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAGgtgagctccc ... ttttgtacagGTTGCAGTTGCTGTCATGGTTTCATGGCTTATATTCAGAAATCCAATCTCA
EST: TGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAG GTTGCAGTTGCTGTCATGGTTTCATGGCTTATATTCAGAAATCCAATCTCA
genomic: TGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAGgtgagctccc ... ttttgtacagGTTGCAGTTGCTGTCATGGTTTCATGGCTTATATTCAGAAATCCAATCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCAGTTCTGGGGTTTTGGCTTTCTGCCTCAACTTCTCCATCTTCTATGTGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAGgtgagctcccttaaatagaaaccatctctgaatactgttctctataatacatttattgatttaattgctataatgaatcatcatcctcggccatcctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatctc