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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaataagcaaaagtttacctgttttgctaataagaacagatgacaaatcaattagtaatgcataaagtaaaaaatatttgtttgctcatgtggaaatttttgtgatggatgaacttcag

Basic information

species Vitis vinifera
transcript Vv18s0001g02700.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 5'ss of exon 5
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaataagca--aaagtttacctgttttgctaataagaacagatgacaaatcaattagtaatgcataaagtaaaaaatatttgtttgctcatgtggaaatttttgtg---atggatgaacttcag
||||||| ||||||||||||    ||||| || || || ||||| ||||||||||||||||| ||||| || |||||  | |||||||| |||||||||||| || ||          | || | |    |  | | | || ||    | | |   | || | |   |||  |   |||     ||   | | |  ||       |  | |   | ||||| |     |  || | ||||||
GATGGGAGACCTGGATGTGTTATGAACACATGTGCTCACAGAGCTTGCCCTCTTCATCTTGGCTCAGTTAATGAGGGCAGAATCCAATGCCCTTACCATGgtaagaaaagacagctttacatgaactttcatttctgcatgcttccgcatttatttctgaagtct--tcagatgaaaatttgccaacagagagaagttgcgaaagtagtatttcagtttttttttgttttcataaccttcag

upper sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 5
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaataagcaaaagtttacctgttttgctaataagaacagatgacaaatcaattagtaatgcataaagtaaaaa-atatttgtttgctcatgtggaaatttttgtgatggatgaacttcag
||||||| |||||||||||| |  ||||| || || || ||||| ||||||||||||||||| ||||| |  |||||| | |||||||| |||| ||||||| || || |  ||||    ||| | |||  |     ||    |||  |         | ||||    |||   || |||| |  ||  |  ||   | | ||                                   
GATGGGAGACCTGGATGTGTTCAGAACACATGTGCTCACAGAGCCTGCCCTCTTCATCTTGGCTCAGTTAGTGAGGGTAGAATCCAATGCCCTTTCCATGgtaag-aaaaaagaaactttatatg-aaatttcattttggcacgcttctgctgttt--ttacaatctgattttcaaagcatcagctagcactatggctatatga----------------------------------

upper sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G171390_T05 (Zea mays), 5'ss of exon 5
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaataagcaaaagtttacctgttttgctaataagaacagatgacaaatcaattagtaatgcataaagtaaaaaatatttgtttgctcatgtggaaatttttgtgatggatgaacttcag
|| || |  || || ||||| |  ||||| |||||||| || |||||||| || |||||||| ||||| ||||||||  | ||||| || |||||||||||| | ||||| || ||    || ||   |  |  ||||  |     || || ||   |||     | ||    ||| || || |   || ||| ||                                         
GACGGAAGGCCCGGGTGTGTTCAGAACACATGCGCCCACAGGGCATGCCCGCTGCATCTTGGTTCAGTGAACGAGGGCAGGATCCAGTGCCCTTACCATGgtaattaagaaggcaa----atcagtcga--tcgacctactga---aaaaacaattaatgcacggttaacatataacgcctatatataataatcttcag--------------------------------------

upper sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 5
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaag-gaaataagcaaaagtttacctgttttgctaataagaacagatgacaaatcaattagtaatgcataaagtaaaaaatatttgtttgctcatgtggaaatttttgtgatggatgaacttcag
|| || |  ||||| ||||| |  ||||| || || || || || ||||| || |||||||| ||||| ||||||||| | ||||| || |||||||||||| |||            ||| || |  | || ||  | |  || ||            |  |   |   | || | |||    | |        ||||||| | | |||   ||||                     
GACGGAAGGCCTGGGTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcctactgtctgaattaggtcagagattctcggggttactg-----------tatcttgttt-tcagaagtgcgcctacttgt-----tttgtttaccc-tgtctgaatta--------------------

upper sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G03430.1 (Glycine max), 5'ss of exon 5
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaataagcaaaagtttacc-tgttttgctaataagaacagatgacaaatcaattagtaatgcataaagtaaaaaatatttgtttgctcatgtggaaatttttgtgatggatgaacttcag---------------
|||||||| ||||||||||| |  |||||||| || |||||||| |||||||| || ||||| |||||||| |||||||||||||||||||| |||||||||||||       |||  |||| |  | |  ||  |  ||  ||     |||     ||||  ||   |  |   | | || |    | ||  ||    |||    |    ||||||    |  |  |  || ||||                
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACATAGAGCCTGCCCTCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATGgttagttgtcaccaaaacaaatgattatatcttagcaatgagttaaatgtaattgttgatgctaatgtaggtgtaatttcacattacacaacctacagatttatgtacactgaaattgacatactcta-aaatttcaaatggttggatatcag

upper sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G11920.1 (Glycine max), 5'ss of exon 5
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaa----taagcaaaagtttacctgttttgctaataagaacagatgaca--aatcaattagtaatgcataaagtaaaaaatatttg----tttgctcatgtggaaatttttgtgatggatgaacttcag------------------------------------
|||||||| ||||||||||| |  || |||||||| || |||||||||||||| || ||||| || || || |||||||||||||||||||||||||||||||||||    |  || ||      | | |   |  |||     ||| ||  |   || | |||| |  ||| | |||      |    ||  | | |||  ||    | |   |  |     | || | || |  | | | |  |                                     
GATGGGAAGCCTGGATGTGTTCAAAATACCTGCGCACACAGAGCATGCCCTCTGCACCTTGGTTCTGTGAAGGAGGGTCGTATCCAATGTCCTTACCATGgttagtagtcagtgaatgatgactcttaactccaacttatggaattttctgctcc-aatacatgatagcaatgagttatatgcactggtagatacacatacatgaaaatatatcctagcaatgagttatatgctatacgcattaaaacatacaggttaaaaatatctaatggttggatgttag

upper sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G23860.2 (Glycine max), 5'ss of exon 5
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaataa----------gcaaaagtttacctgt-tttgctaataagaacagatg-acaaatcaattagtaatgcataaagtaaaaa---atatttgtttg--ctcatgtgg---aaatttttgtgatggatgaacttcag
|||||||| ||||||||||| |  |||||||| || ||  |||| || ||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||       ||  |||| |          ||||    |||  ||   ||  | |||       ||| |    | | ||   |   ||||   || | |   || |    | |   | | ||     ||| |||    |||| || |  ||||
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTCTGCACCTTGGTTCAGTAAACGAGGGTCGTATCCAATGTCCCTACCATGgttagtagtcactgaaacaaatgattatgtcctagcaatgaattatatgcacttcttgatacttgataatgtatgtgtaatttcacatgacatagcctacagatttatgtacactggaattgacgtactctaaaatttcaaaatggttggatatcag

upper sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G42840.1 (Glycine max), 5'ss of exon 5
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaataagcaaaagtttacctgttttgctaataagaacagatgacaaatcaattagtaatgcataa-agtaaaaaatatttgtttgctcatgtggaaatttttgtgatggatgaacttcag
|||||||| ||||| ||||| |  |||||||| || || |||||||| ||||| || ||||| || || || ||||||||||||||||| |||||||||||||||||   ||  || ||        |   |||||      |  |||  | |          |||  || | ||   | ||  | | |   ||||    | | ||||                              
GATGGGAAGCCTGGGTGTGTTCAGAACACCTGTGCACACAGAGCATGTCCTCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagttggtgaatga------tgactctttacaccaact--taaggaaatttttgcttcaatacatgattatatcctagcaatgagttatatgcactggttcat------------------------------

upper sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 5
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaataagcaaaagtttacctgttttgctaataagaacagatgacaaatcaattagtaatgcataaagtaaaaaatatttgtttgctcatgtggaaatttttgtgatggatgaacttcag
|| |||||||| |||||||| || || || || || ||||||||||| |||||| |||||||  |||| |||||||| ||||| |||||||| |||||||||||||||          |    |   || ||| |      |  | | | ||||   ||  |  || || |   | |   ||                                                       
GACGGGAAACCAGGATGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAGGGACGTATTCAATGTCCGTACCATGgttagtaactctttctttagtctac--aatgttga------taacaagtgagaaaccatatcttattaaatgtgattttgtag------------------------------------------------------