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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaatttcttcgcttgtgtaaccttctcgtggactcatagttgtacatatgtcagcatactgagttgtacatgtgtcagcatactgaggattct...

Basic information

species Vitis vinifera
transcript Vv18s0001g02260.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g08520.1 (Oryza sativa), 5'ss of exon 4
GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaatttcttcgcttgtgtaaccttctcgtggactcatagttgtac-atatgtcagcatactgagttgtacatgt-gtcagcatactgaggattct
|||||| || ||||||||||| || || ||||||||||| |||||| | ||  ||||||| || || || |||||||  ||||| |||||||||||   | || |   ||   ||  | || | || |  |  ||  | ||   |     |    |||||  || |  | |   | | |   | |  | |  
GTTTGGGCCGTACTTCTGCCAACCAGTTATTGCTGGATTAGGAGATAATGATGAGCCATTTATATGTACCATGGATTGCATTGGTGCCAAgtatgtatcacttatattctctcgtctcattttagtcgtttactaaatttattgtccaaaattcaactgatctgaagttctcaacggtaccataaacaat--

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 2
GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaatttcttcgcttgtgtaaccttctcgtggactcatagttgtacatatgtcagcatactgagttgtacatgtgtcagcatactg-----aggattct-
||||||||||||||| ||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||||| | |||||||| ||||| ||| || |  |    |||| ||| ||   |    | | |  |||     |   | || | | | |||  || | |  |  |||||        ||  |||| 
GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGACAAGCCATTCATTTGCACAATGGATGCCATTGGAGCAAAgtaagtttaagtatta---ttgtataatctgtgcccttatttactgttcagtgt---tgaggaaagttagtgttatagggattggcatatcacgtctagatttctt

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G24270.2 (Glycine max), 5'ss of exon 3
GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaatttcttcgcttgtgtaaccttctcgtggactcatagttgt-acatatgtcagcatactga-gttgtacatgtgtcagcatactgaggattct
|||||||||||| || ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||  ||||| || ||||| ||||||||  |   |       |  |||| || ||   |   | || |  |     | | | |  | |||    |||||| || ||| |  | ||  |
GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaattattagacagtccatattttcttgtagagggaggttggtgatgtgcaaaatcttgcaaatgttagcaatgtgt-agtata-tatgtataat

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G42830.1 (Glycine max), 5'ss of exon 2
GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaatt--tcttcgcttgtgtaaccttctcgtggactcatagttgtacatatgtcagcatactgagttgtacatgtgtcagcatactgaggattct
||||||||||||||| ||||||||||| ||||||||| | |||||||| ||||| ||||||||||||||||||||| | |||||||| ||||| ||| || |  |||  ||   | |   ||  |   |   | |     ||   | | | ||     |    || | |  | ||  | ||     ||||  
GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGACAAACCATTCATTTGCACAATGGATGCCATTGGAGCAAAgtaagtttaagtaatctgtgcccttatttactgttta-gtgttgaggaaggttagtgttttagtgatattcactgcatacatttcttc-tataatagatttc

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G10130.1 (Glycine max), 5'ss of exon 3
GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaatttcttcgcttgtgtaaccttctcgtggactcatagttgtacatatgtcagcatact-gagttgtacatgtgtcagcatac-tgaggattct
||||||||||||||| || |||||||| ||||||||||| || ||||||||||| |||||||| |||||||||||||   |||| || ||||| ||||||||  ||  |       |  |||| || ||   |     |||  | |   | | | || | |||    |||||| || |||  ||   |    
GTTTGGTCCATACTTTTGTCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaattattttacagtccatattttcttgtagagggaggtcggtatgtttaaaatcttgctagtgttagcaatgtgt-agtataaatgtataaag-

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G21720.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttga-atttcttcgcttgtgtaaccttct-cgtggactcatagttgtacatatgtcagcatactgagttgtacatgtgtcagcatactgaggattct
 |||||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| || || ||||||||||||||| | || | |||     | ||| ||      || |   |   || |   | |  ||   || ||   |   | || || ||  |  |  | ||   
ATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGACAAGCCTTTCATTTGCACGATGGACTCTATCGGAGCCAAgtatgttcacatctattcttggttataatctctgatttgtatggacgattttcgctcttacatgttaatgtcattagcttg-gttagtgtggtctgtatag-

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G77440.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaatttcttcgct-tgtgtaaccttctcgtggactcatagttgtacatatgtcagcatactgagttgtacatgtgtcagcatactgaggattct-
 ||||| |||| ||| ||||| ||||||||||||||||||||||||||  |||| || ||||||||||| |||||||| |||||||||||||||| |   |||||||  |   |   || || |     | |  | ||  |  | ||| ||    | | | ||   ||         ||  |||   ||   
ATTTGGCCCATTCTTGTGCCAACCTGTGATTGCTGGATTGGGAGATGATAACAAACCCTTCATTTGCACTATGGATTCTATTGGAGCCAAgtatgctcgctttcttcattacttaagacgttatatctcatttttcgtc-tgta-atgccatttaatttacttagtcagtgactgtaatcgtgaaacttgct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351025252|gb|FQ434265.1|FQ434265
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351043059|gb|FQ443901.1|FQ443901
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110358622|gb|EC922965.1|EC922965
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351036035|gb|FQ463880.1|FQ463880
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351042763|gb|FQ431241.1|FQ431241
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|33406690|gb|CF212317.1|CF212317
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351046593|gb|FQ453209.1|FQ453209
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|33406790|gb|CF212417.1|CF212417
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110399653|gb|EC966170.1|EC966170
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351015363|gb|FQ446242.1|FQ446242
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|349832596|gb|FQ421954.1|FQ421954
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351045652|gb|FQ440837.1|FQ440837
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|349813662|gb|FQ413896.1|FQ413896
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|71889280|gb|DT038335.1|DT038335
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|71882433|gb|DT031488.1|DT031488
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351048930|gb|FQ449773.1|FQ449773
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110402513|gb|EC960313.1|EC960313
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|26257297|gb|CA808360.1|CA808360
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351054655|gb|FQ456852.1|FQ456852
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGCCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|26258189|gb|CA809252.1|CA809252
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351025704|gb|FQ426718.1|FQ426718
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351018809|gb|FQ425711.1|FQ425711
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|22011604|gb|BQ796638.1|BQ796638
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110414417|gb|EC980248.1|EC980248
EST:     GCCATTCATCTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351018791|gb|FQ425693.1|FQ425693
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|349809085|gb|FQ398085.1|FQ398085
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|349815197|gb|FQ400352.1|FQ400352
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|349829265|gb|FQ419797.1|FQ419797
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|349829602|gb|FQ421120.1|FQ421120
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351037207|gb|FQ457040.1|FQ457040
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110689722|gb|EE066205.1|EE066205
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|349829652|gb|FQ421170.1|FQ421170
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|349808570|gb|FQ405714.1|FQ405714
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110717244|gb|EE092941.1|EE092941
EST:     GGAGATGAAGACAAGCCATTCATCTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|30125493|gb|CB910832.1|CB910832
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110394987|gb|EC960457.1|EC960457
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110722163|gb|EE098155.1|EE098155
EST:     AGACAAGCCATTCATCTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: AGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|71890265|gb|DT039320.1|DT039320
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110387657|gb|EC952341.1|EC952341
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351045223|gb|FQ451671.1|FQ451671
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|349832955|gb|FQ423077.1|FQ423077
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351018701|gb|FQ425603.1|FQ425603
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110423662|gb|EC990010.1|EC990010
EST:     GGAGATGAAGACAAGCCATTCATCTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110700596|gb|EE077387.1|EE077387
EST:     GGAGATGAAGACAAGCCATTCATCTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110372541|gb|EC936718.1|EC936718
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110362397|gb|EC925927.1|EC925927
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|30299742|gb|CB976536.1|CB976536
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|349813934|gb|FQ414168.1|FQ414168
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|77578611|gb|DV218095.1|DV218095
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110423854|gb|EC990205.1|EC990205
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351029247|gb|FQ435447.1|FQ435447
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110391604|gb|EC956591.1|EC956591
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110715271|gb|EE093128.1|EE093128
EST:     GGAGATGAAGACAAGCCATTCATCTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|71859023|gb|DT008078.1|DT008078
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|351031280|gb|FQ445305.1|FQ445305
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|294966117|gb|GW837484.1|GW837484
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|110381521|gb|EC934688.1|EC934688
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|161706889|gb|FC056789.1|FC056789
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAA
EST: gi|349822039|gb|FQ408368.1|FQ408368
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
EST: gi|161720329|gb|FC071182.1|FC071182
EST:     GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA                         GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA
genomic: GGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaa ... tcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaatttcttcgcttgtgtaaccttctcgtggactcatagttgtacatatgtcagcatactgagttgtacatgtgtcagcatactgaggattct

- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc