Sequence
atgc intronic sequence ATGC exonic sequenceGGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACGCGACGTGGTCAAGTCTTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAGgtttttacccttttactgacacatgtttgtggtgtctatatagagcttgttttccaatgcatcctttattcttgttttttgacatttctaaagcttgtgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 4
GGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACGCGACGTGGTCAAGTCTTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAGgtt-----tttacccttttactgacacatgtttgtggtgtctatatagagcttgttttccaatgcatcct--ttattcttgttttttgacatttctaaagcttgtgc---------------------
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GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctccattgccttattgtcttttagtagtagttccaaattgatgttgattttacagtatggttaggctaggtctatttcctgaaaactt---agtttgttaattaactgcattattcatcag
upper sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 3
GGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACGCGACGTGGTCAAGTCTTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAGgtt--tttacccttttactgac-acatgtttgtggtg--tctatatagagcttg-ttttccaatgcatcct--ttattcttgttttttgacatttctaaagcttgtgc---------------------
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---------------GAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAGgttacttctccattctcctgattgttttttagcagtagttctaatttgattttgattctgcagtatggtcatgttagttccattcccagaaaactt---agtttgttaattaactgcattattcatcag
upper sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 4
GGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACGCGACGTGGTCAAGTCTTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAGgtt--tttacccttttactgac-acatgtttgtggtg--tctatatagagcttg-ttttccaatgcatcctt--tattcttgttttttgacatttctaaagcttgtgc---------------------
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GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAGgttacttctccattctcctgattgttttttagcagtagttctaatttgattttgattctgcagtatggtcatgttagttccattcccagaaaactt---agtttgttaattaactgcattattcatcag
upper sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACGCGACGTGGTCAAGTCTTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAGgtttttacccttttactgacacatgtttgtggtgtctatatagagcttgttttccaa---tgcatcctttattcttgtttt-------ttgacatttctaaagcttgtgc----------------
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GGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGATGGATCAACGAGACGTGGTCAGGTCTTGGAGGTTGATGGGGAGAAAGCTGTTGTCCAGgtttatgatctttcatattattgtaaatgttaattctgcataacactagtttgttgaatctaggtgatgaatgcacatgctatagagatcaatgccctcaatgattaatccatctatggctttcag
upper sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACGCGACGTGGTCAAGTCTTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAGgtttttacccttttactgacacatgtt--tgtggtgtctatatagagcttgttttccaatgc----atcctttattcttgttttttgacatttctaaagcttgtgc-------
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GGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGATGGATCAACGAGACGTGGTCAGGTTTTGGAAGTTGATGGCGAGAAAGCAGTTGTGCAGgtttaggattgttttttgtc-catgttacttcaaacattgaataatacttaaacacaaacttcgtgaatctagtcacttcttcagtgacttacttatcacttaagggtttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110706083|gb|EE083673.1|EE083673EST: CACGACGTGGTCAAGTCCTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAG GTTTTTGAAGGCACTTCTGGAATTGACAACAAATACACAACCGTGCAATTT
genomic: CGCGACGTGGTCAAGTCTTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAGgtttttaccc ... atttccccagGTTTTTGAAGGCACTTCTGGAATTGACAACAAATACACAACCGTGCAATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACGCGACGTGGTCAAGTCTTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAGgtttttacccttttactgacacatgtttgtggtgtctatatagagcttgttttccaatgcatcctttattcttgttttttgacatttctaaagcttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT