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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGgtaaacttctcttctcatctccctttattgctgaattagaagctgtttgtgtctttaagtattagccttggtttgtaatttgattaatttgtctatttgttaatgtgtcttctctgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g00480.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g00480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G19220.1 (Glycine max), 5'ss of exon 4
GCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGgtaaacttctcttctcatctccctttattgctgaattagaagctgtttgtgtctttaagtattagccttggtttgtaatt-tgattaatttgtctatttgttaatgtgtcttctctgcag
|| || ||| ||||||| ||||| ||||||||| |||| ||||||||||| |||||||||||||||||||| |      ||| ||| |  | ||| ||| ||            |||    | |  | |    ||  ||| || |  | | |||||  | ||| | |  |||||   |  ||||||
GCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTGGGGCCAAAGGGAATGgtaaaat------ctcttcttcactcattactgtat------------gtggtggtgataaatgattttattttctactcataactaattcatatatct-tggatgtga--taactgcag

upper sequence: Vv18s0001g00480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G09250.1 (Glycine max), 5'ss of exon 4
GCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGgtaaacttctcttctcatctccctttattgctgaattagaagctgtttgtgtctttaagtattagccttggtttgtaatttgattaatttgtctatttgttaatgtgtcttctctgcag
|| || ||| ||||||| ||||| ||||||||| | || ||||||||||| |||||||||||||||||||| |   ||  ||| |||  | ||| |  |   ||  |  || || | | ||  | |  || |  |  ||| || | |  |  |||||  ||  ||                    
GCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTAGTGAAGACAACCTTGGGGCCAAAGGGAATGgtaaaatctcctcttca-ctcattatat-gtggtggtaataaatgattttattttctactcataac--taatttata-tatcttggatttga-taactgcag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352769329|gb|FQ471478.1|FQ471478
EST:     CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATG                         GATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
genomic: CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGgtaaacttct ... ttctctgcagGATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
EST: gi|71880141|gb|DT029196.1|DT029196
EST:     CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATG                         GATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
genomic: CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGgtaaacttct ... ttctctgcagGATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
EST: gi|352782455|gb|FQ470358.1|FQ470358
EST:     CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATG                         GATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
genomic: CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGgtaaacttct ... ttctctgcagGATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
EST: gi|161714038|gb|FC064113.1|FC064113
EST:     CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATG                         GATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
genomic: CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGgtaaacttct ... ttctctgcagGATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
EST: gi|352765070|gb|FQ473718.1|FQ473718
EST:     CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATG                         GATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
genomic: CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGgtaaacttct ... ttctctgcagGATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
EST: gi|352773730|gb|FQ472512.1|FQ472512
EST:     CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATG                         GATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
genomic: CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGgtaaacttct ... ttctctgcagGATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
EST: gi|352777695|gb|FQ466748.1|FQ466748
EST:     CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATG                         GATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
genomic: CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGgtaaacttct ... ttctctgcagGATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
EST: gi|352781730|gb|FQ469028.1|FQ469028
EST:     CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATG                         GATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
genomic: CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGgtaaacttct ... ttctctgcagGATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
EST: gi|352777783|gb|FQ466836.1|FQ466836
EST:     CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATG                         GATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT
genomic: CAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGgtaaacttct ... ttctctgcagGATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAAT