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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAAATGAATGGCGCTGTGGATACTGCAAGAAAAGCTTCCGTGCAGAGAAATTTCTTGATCAACATTTTGACAACAGACACTATGGTCTTCTGAATGTTgtatgtggtccctggttccttgtccattttgttcataccattagttgtcaagttcaatctgaatgctcaaatttatcaaattgtctatttcattttatgt...

Basic information

species Vitis vinifera
transcript Vv17s0000g10170.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g10170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os12g13130.4 (Oryza sativa), 5'ss of exon 5
TATAAATGAATGGCGCTGTGGATACTGCAAGAAAAGCTTCCGTGCAGAGAAATTTCTTGATCAACATTTTGACAACAGACACTATGGTCTTCTGAATGTTgtatgtggtccctggttccttgtccattttgttcataccattagttgtcaagttcaatctgaatgctcaaatttatcaaattgtctatttcattttatgt----
||||||||||||||||||||| | ||||||||||  |||||| |||||||| || |||||||| |||||| ||||  | ||| ||  |||| || ||  ||||||   | | |      |||         |||| | |||  |||    |  ||| |   | |  |   || | |    || | | ||| ||  |||      
TATAAATGAATGGCGCTGTGGTTTCTGCAAGAAAGCCTTCCGAGCAGAGAAGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATgtatg--attcttaccgatttgcatgagactttca-atcatccgttccataaatcacttgtactagtttcatatct-gctttctttctttgatagtattggtgt

upper sequence: Vv17s0000g10170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G02180.1 (Glycine max), 5'ss of exon 4
TATAAATGAATGGCGCTGTGGATACTGCAAGAAAAGCTTCCGTGCAGAGAAATTTCTTGATCAACATTTTGACAACAGACACTATGGTCTTCTGAATGTTgtatgtggtccctggttccttgtccattttgttcataccattagt--tgtcaagttcaatctgaatgctcaaatttatcaaattgtctatttcattttatgt
|  | |||||||||| |||||||| || ||||||||||| |||| ||| |||||||||||||| |||||||||| |||||||||   | |||||||| | ||||||         | | ||   |||| ||||   |  ||   |  |||   || |  |   |    | || |||||||  || |  | |   ||| | | 
TCGACATGAATGGCGGTGTGGATATTGTAAGAAAAGCTTTCGTGAAGAAAAATTTCTTGATCAGCATTTTGACAGCAGACACTACAATTTTCTGAATCTAgtatgtcaatttcattccttttctcattgtgtttggaggatacataatgtgctgtgcgcttaaagcttttaattttatcag-ttattgaatgagtttgaag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110416570|gb|EC982560.1|EC982560
EST:     AATTTCTTGATCAACATTTTGACAACAGACACTATGGTCTTCTGAATGTT                         AGTCATAGCAAGTGCTTGGCGGATTTATGTGGGGCGTTGCATTGTGACCTT
genomic: AATTTCTTGATCAACATTTTGACAACAGACACTATGGTCTTCTGAATGTTgtatgtggtc ... atgaattcagAGTCATAGCAAGTGCTTGGCGGATTTATGTGGGGCGTTGCATTGTGACCTT