Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAGgtatttgcttttctaattcaatcaacccttctcatgctttttgatttcttatactaattatgtgaatggctatagtcccatccttctcctgcagtggaatggagctattactgctattactgagcttaaataatttcattccttgatttcaacag

Basic information

species Vitis vinifera
transcript Vv17s0000g09870.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G36570.1 (Glycine max), 5'ss of exon 3
ATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAGgta--tttgcttttctaattcaatcaacccttctcatgctttttgatttcttatactaa-ttatgtgaatggctatagtcccatccttctcctgcagtggaatggagctattactgctattactgagcttaaataatttcattccttgatttcaacag
| ||||||||||||||||| || ||||| ||| ||||||| || |||||||| || | ||| ||    || ||||| |||||||||||||||||||||  ||  |||||||  || | |      || || | |     | | | | |   |||  |   ||||  | |       |||  | ||  |||| | | |    ||  ||                                              
ACGGTGCTGGTGGTAAGGGCACTTGGGGGAAATTGCTTGATACAGATGGTGAATCCCGTATAGACAAGAACGATCCAAACTATGATAGCGGCGAGgtaatttctcttttctggtttagtgggtagtt-tcttacacacggttatgtaaagttaagctgcttgaaaagtt-----tacatgatgct--tgcaatagca----gccttt----------------------------------------------

upper sequence: Vv17s0000g09870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G13570.1 (Glycine max), 5'ss of exon 3
ATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAGgta--tttgcttttctaattcaatcaacccttctcatgctttttgatt-tcttatactaattatgtgaatggctatagtcccatccttctcct-gcagtggaatggagctattactgctattactgagcttaaataatttcattccttgatttcaacag
||||||||||||||||||| || ||||||||| ||||||| || |||  ||| || || || || || |||||||| || ||||| || |||||||||  ||  |||  ||  ||   |      || |        |||||| | | | ||||  |   |||| |  |   ||   || ||| |  | ||| || |                                                         
ATGGTGCTGGTGGTAAGGGTACTTGGGGAAAATTGCTTGATACAGATATTGATTCTCACATAGACCGGAATGATCCAAATTATGACAGTGGCGAGgtaaattctcttcccttgttttgttggtagtttttggcaacattgattatgtaacactagctgcttgaaagttt---gttaaattcttgtagtagcaatgtag--------------------------------------------------------

upper sequence: Vv17s0000g09870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G02910.1 (Glycine max), 5'ss of exon 3
ATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAGgta--tttgcttttctaattcaatcaacccttctcatgctttttgatt-tcttatactaattatgtgaatggctatagtcccatccttctcctg-cagtggaatggagctattactgctattactgagcttaaataatttcattccttgatttcaacag
||||||||||||||||||| || ||||||||| ||||||| || |||  ||  || || || || ||  ||||||| || ||||| || |||||||||  ||   ||  ||  ||   |      || |        |||||| | | | ||||  |   ||||     ||| |   || | | |  |  ||||| |                                                         
ATGGTGCTGGTGGTAAGGGTACTTGGGGAAAATTGCTTGATACAGATATTGTTTCTCACATAGACCGGCATGATCCAAATTATGACAGTGGCGAGgtaaattctattccctgtttttgttggtagtttttggcaacattgattatgtaacactagctgcttgaaaa---ataattaaatgcatgtagtatcagtgtag--------------------------------------------------------

upper sequence: Vv17s0000g09870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G63190.2 (Arabidopsis thaliana), 5'ss of exon 3
ATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGA---TGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAGgtatttgcttttctaattcaatcaacccttctcatgctttttgatttcttatactaat-tatgtgaatggctatagtcccatccttctcctgcagtggaatggagctattactgctattactgagcttaaataatttcattccttgatttcaacag
| ||||||||||| || ||||| |||||||| || |||||||||||   |||||| ||   |||||||   ||||||||||| || ||||| || |||||| || | | | |    |  |       | |       |||   || ||    || | ||| | |    |  |  |   ||| ||     | |||    ||    | | | |  ||| ||| |  ||||                          
AGGGTGCTGGTGGCAAAGGAACTTGGGGAAAGCTTCTTGACACTGATGATGGTGACTCCTGTATTGATAAGAATGATCCCAATTACGATAGTGGAGAGgtactttcatatttgcgccttttgttttgtgttggatacttttccttgtttctttagtgtatctaacatcccttgattttatcttttattagtagtt---tgcttttttcattcatat-actcaatttaacag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110384166|gb|EC948585.1|EC948585
EST:     ATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAG                         GAACCGTATCAGCTTGTTGGGTCCACGATTTCAGACCCCTTAGATGAATAT
genomic: ATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAGgtatttgctt ... atttcaacagGAACCGTATCAGCTTGTTGGGTCCACGATTTCAGACCCCTTAGATGAATAT