Sequence
atgc intronic sequence ATGC exonic sequenceGACGATAAAAGTCCGGCTTACAAACAAAGGAACCATGCGTACTTATAAGAATGCTAGAGGAGAAGGTTGTGTCTTCAATGTAGAGTTAACAGATGAGGATgtaagcagaaaaagaatccattttctgagaatgctagatactttgtgctgactaaatttgcaatattttgtgtgtttgggtcatatctctacaattaacatcataattgtttcagcaaattggtttctcttggtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G098714_T01 (Zea mays), 5'ss of exon 4
GACGATAAAAGTCCGGCTTACAAACAAAGGAACCATGCGTACTTATAAGAATGCTAGAGGAGAAGGTTGTGTCTTCAATGTAGAGTTAACAGATGAGGATgtaagcagaaaaagaatccattttctgagaatgctagatactttgtgctgactaaatttgcaatattttgtgtgtttgggtcatatctctacaattaacatcataattgtttcagcaaattggtttctcttggtgcag
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GGTCATTAAGGTGCGGGTCACGAGCAAAGGCAACCTGAGAACCTACAGGAATGCTCGCGGAGAAGGCTGTGTCTTCAATGTAGAGCTCACCGATGAGGATgtaagcggtctgatgg--cattgttctcaagt-ttaagtg-tgtattttca-tgagttgtcgcgggttcacgaactgatattatttttttt---ttgattttgtgtatgca-cag-----------------------
upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G00370.2 (Glycine max), 5'ss of exon 4
GACGATAAAAGTCCGGCTTACAAACAAAGGAACCATGCGTACTTATAAGAATGCTAGAGGAGAAGGTTGTGTCTTCAATGTAGAGTTAACAGATGAGGATgtaagcagaaaaagaatccattttctgagaatgctagatact-ttgtgctgactaaatttgcaatattttgtgtgtttgggtcatatctctacaattaacatcataattgtttcagcaaattggtttctcttggtgcag
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GACAATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTACCTATAAGAATGCTAGGGGTGATGGTTGCGTCTTCAATGTTGAATTGACGGATGAAGATgtaag---aattattgtgtatttattttggaatttgaatgttgtcttgcatgttaaatctggagggtgatgtcgttttgttttgaaattttccag--------------------------------------------
upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G08660.1 (Glycine max), 5'ss of exon 4
GACGATAAAAGTCCGGCTTACAAACAAAGGAACCATGCGTACTTATAAGAATGCTAGAGGAGAAGGTTGTGTCTTCAATGTAGAGTTAACAGATGAGGATgtaagcagaaaaagaatccattt-tctgagaatgctagatactttgtgctgactaaatttgcaatattttgtgtgtttgggtcatatctctacaattaacatcataattgtttcagcaaattggtttctcttggtgcag
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GACAATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTAACTATAAAAATGCTAGGGGTGATGGTTGTGTCTTCAATGTCGAATTGACGGATGAAGATgtaag---aattgttgtgtatttgttttggaatgtgaatgttgtcttgcttgttatgtgtggagggtgatgtttttttgttttgaaattttccag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33408705|gb|CF214332.1|CF214332EST: ATGCTAGAGGAGAAGGTTGTGTCTTCAATGTAGAGTTAACAGATGAGGAT GGTACACAAATCCAAGCAACAATGTTTAACGAAGCTGCAAGGAAGTTCTAT
genomic: ATGCTAGAGGAGAAGGTTGTGTCTTCAATGTAGAGTTAACAGATGAGGATgtaagcagaa ... cttggtgcagGGTACACAAATCCAAGCAACAATGTTTAACGAAGCTGCAAGGAAGTTCTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACGATAAAAGTCCGGCTTACAAACAAAGGAACCATGCGTACTTATAAGAATGCTAGAGGAGAAGGTTGTGTCTTCAATGTAGAGTTAACAGATGAGGATgtaagcagaaaaagaatccattttctgagaatgctagatactttgtgctgactaaatttgcaatattttgtgtgtttgggtcatatctctacaattaacatcataattgtttcagcaaattggtttctcttggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT