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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTTGTGGACAGCTTGTCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAGgttgtacacgcgtcttcttcaatcttactctaattctacttgtcttcgcttacttttctttttgacttgttggtactggattgttacaggtacatattagttgagaatatcattgttactgttcagttgtgcaactgtactagaagataaacatactcattgtgtctctcag

Basic information

species Vitis vinifera
transcript Vv17s0000g05800.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g05800.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G01290.1 (Glycine max), 5'ss of exon 3
CCATTTGTGGACAGCTTGTCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAGgttgtacacgcgtcttcttcaatcttactctaattctacttgtcttcgcttacttttctttttgacttgttggtactggattgttacaggtacatattagttgagaatatcattgttactgttcagttgtgcaactgtactagaagataaacatactcattgtgtctctcag
|| |||||||| ||||||||||  || |||||||||||| |||| ||||| ||||| ||||| || ||||   ||  |  | | |||      || ||   ||||   |           | | |  |  |   || |   |  ||||||  |    || ||||   ||                                                                       
CCCTTTGTGGAAAGCTTGTCCAGCTGTCCCAAACATGGTGTACACAATCCTTTTAAGGCACCAGAGAGgtatgaccagattatcctttgtatctattcattttctttatagaaatagaagcatataataatcttttttctttgttggattaatgtttgt-cataaacgt-----------------------------------------------------------------------

upper sequence: Vv17s0000g05800.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G62530.1 (Arabidopsis thaliana), 5'ss of exon 4
CCATTTGTGGACAGCTTGTCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAGgttgtacacgcgtcttcttcaatcttactctaattctacttgtcttcgcttacttttctttttgacttgttggtactggattgttacaggtacatattagttgagaatatcattgttactgttcagttgtgcaactgtactagaagataaacatactcattgtgtctctcag
||||||||||||||||| ||| ||||||| ||||||||||| ||||| || || ||| | || || ||||     | |  |    |    | |    ||| |||| ||||| ||   | | ||  | |||||  |  |   |   |||| || |  |     | ||                                                                          
CCATTTGTGGACAGCTTATCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAGAGgt-----atgatttggttgaggtttggtgctatttcttcttgttttg--tcatttcccattttgtttcatatatgaaggatagtaatggtcttgttttctacag--------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110718820|gb|EE096093.1|EE096093
EST:     TCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAG                         GTATCTCATGTTAGGAGACATATCCAACAAGGCAGCTCACATGCTTTCCCT
genomic: TCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAGgttgtacacg ... tgtctctcagGTATCTCATGTTAGGAGACATATCCAACAAGGCAGCTCACATGCTTTCCCT
EST: gi|161717382|gb|FC069212.1|FC069212
EST:     TCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAG                         GTATCTCATGTTAGGAGACATATCCAACAAGGCAGCTCACATGCTTTCCCT
genomic: TCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAGgttgtacacg ... tgtctctcagGTATCTCATGTTAGGAGACATATCCAACAAGGCAGCTCACATGCTTTCCCT
EST: gi|71875127|gb|DT024182.1|DT024182
EST:     TCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAG                         GTATCTCATGTTAGGAGACATATCCAACAAGGCAGCTCACATGCTTTCCCT
genomic: TCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAGgttgtacacg ... tgtctctcagGTATCTCATGTTAGGAGACATATCCAACAAGGCAGCTCACATGCTTTCCCT
EST: gi|161714309|gb|FC062610.1|FC062610
EST:     TCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAG                         GTATCTCATGTTAGGAGACATATCCAACAAGGCAGCTCACATGCTTTCCCT
genomic: TCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAGgttgtacacg ... tgtctctcagGTATCTCATGTTAGGAGACATATCCAACAAGGCAGCTCACATGCTTTCCCT
EST: gi|110698054|gb|EE075624.1|EE075624
EST:     TCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAG                         GTATCTCATGTTAGGAGACATATCCAACAAGGCAGCTCACATGCTTTCCCT
genomic: TCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAGgttgtacacg ... tgtctctcagGTATCTCATGTTAGGAGACATATCCAACAAGGCAGCTCACATGCTTTCCCT