1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGTCTCATTGTCATCGTTCTATAATAACACTATAGTATCCTGCCCAACTTGCACCTGTGGCTGTCAAAATAATCTAACTCATCCAGGGAGCTGTGTAGAgtaagttacattgagtgtcttttttgctgccattatttcaccatttttctttcttttctaaatttgcattttcagtgttgtcagtgcaatcagtaatgattttctcatgattttttttccttttcttttgttgctgttttacag
species | Vitis vinifera |
transcript | Vv17s0000g05070.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCACCTGTGGCTGTCAAAATAATCTAACTCATCCAGGGAGCTGTGTAGA CCCAAACAATCCATATTTAGCTTCAGTCGTTGAAGGCTCAGGTAAAACCAGEST: gi|110719674|gb|EE095008.1|EE095008
genomic: TGCACCTGTGGCTGTCAAAATAATCTAACTCATCCAGGGAGCTGTGTAGAgtaagttaca ... tgttttacagCCCAAACAATCCATATTTAGCTTCAGTCGTTGAAGGCTCAGGTAAAACCAG
EST: TGCACCTGTGGCTGTCAAAATAATCTAACTCATCCAGGGAGCTGTGTAGA CCCAAACAATCCATATTTAGCTTCAGTCGTTGAAGGCTCAAGTAAAAC-AGEST: gi|110693614|gb|EE069998.1|EE069998
genomic: TGCACCTGTGGCTGTCAAAATAATCTAACTCATCCAGGGAGCTGTGTAGAgtaagttaca ... tgttttacagCCCAAACAATCCATATTTAGCTTCAGTCGTTGAAGGCTCAGGTAAAACCAG
EST: TGCACCTGTGGCTGTCAAAATAATCTAACTCATCCAGGGAGCTGTGTAGA CCCAAACAATCCATATTTAGCTTCAGTCGTTGAAGGCTCAGGTAAAACCAG
genomic: TGCACCTGTGGCTGTCAAAATAATCTAACTCATCCAGGGAGCTGTGTAGAgtaagttaca ... tgttttacagCCCAAACAATCCATATTTAGCTTCAGTCGTTGAAGGCTCAGGTAAAACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTCTCATTGTCATCGTTCTATAATAACACTATAGTATCCTGCCCAACTTGCACCTGTGGCTGTCAAAATAATCTAACTCATCCAGGGAGCTGTGTAGAgtaagttacattgagtgtcttttttgctgccattatttcaccatttttctttcttttctaaatttgcattttcagtgttgtcagtgcaatcagtaatgattttctcatgattttttttccttttcttttgttgctgttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT