Sequence
atgc intronic sequence ATGC exonic sequenceGTTGGAGCTATTGTTTCATATTACAAGATTCCGTTGAAGCAAGTCCTTGTGgtaaagcacttatcattcttccatgttgacttcagcactacctttcctcccaatcagtgaatttctgaactttttttcttgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g03980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G35220.1 (Glycine max), 5'ss of exon 4
GTTGGAGCTATTGTTTCATATTACAAGATTCCGTTGAAGCAAGTCCTTGTGgtaaagcacttatcattcttccatgttgacttcagcactacct--ttcctcccaatcagtgaatttctgaactttttttcttgacag-------------------
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GTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTGgtataatatctatgctatgactactttgttctttatatttgcaagtgacgaaagaaaagtagaaggatgatttgcttgagtattcaattaataattttcttttcag
upper sequence: Vv17s0000g03980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G04500.1 (Glycine max), 5'ss of exon 4
GTTGGAGCTATTGTTTCATATTACAAGATTCCGTTGAAGCAAGTCCTTGTGgtaaagcacttatcattcttccatgttgacttcagcactacctttcctcccaatcagtgaatttctgaactttttttcttgacag------------------------
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GTTGGGACCATAGTTTCATATTACAAGATTCCAGTGAAGCAAGTACTTGTGgtataatatctatgctatgactactttgttctttatat--ctgtaagtgacaaaagaaaaatagaaggatgatctgcttgagtattcaattaataattatttttttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71883924|gb|DT032979.1|DT032979EST: TTGGAGCTATTGTTTCATATTACAAGATTCCGTTGAAGCAAGTCCTTGTG ATTTTTGATGACTTAGATCTGCCTTTTGCAAAACTACGGCTATTGCCAAAA
genomic: TTGGAGCTATTGTTTCATATTACAAGATTCCGTTGAAGCAAGTCCTTGTGgtaaagcact ... ttcttgacagATTTTTGATGACTTAGATCTGCCTTTTTCAAAACTACGGCTATTGCCAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGGAGCTATTGTTTCATATTACAAGATTCCGTTGAAGCAAGTCCTTGTGgtaaagcacttatcattcttccatgttgacttcagcactacctttcctcccaatcagtgaatttctgaactttttttcttgacag
TTGGAG
- GGAGCT
- - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - AGCAAG