Sequence
atgc intronic sequence ATGC exonic sequenceAGTGGAACTTGAGGAGTTCAGGACAGAGGCAACTCATCTAAAGAATCAACAGGCAACAATAAGAAGACTTGAAGAGCGTAATCGCCAGTTAGAACAACAGgttggtactgattataacagttatggtagtaccagcaatacttcaaatttttattttccacttttgcactgcactggaatacttgcctaggccttaataa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g50300.1 (Oryza sativa), 5'ss of exon 3
AGTGGAACTTGAGGAGTTCAGGACAGAGGCAACTCATCTAAAGAATCAACAGGCAACAATAAGAAGACTTGAAGAGCGTAATCGCCAGTTAGAACAACAGgttggtactgattataa-cagttatggtagtaccagcaatacttcaaatt---tttattttccacttttgcactgcactggaatacttgcctaggccttaataa
| | || ||||| |||| | || |||| || | || |||||||| ||||| |||||||| || ||||||| ||||| || ||||| ||||||||||||| || |||||| || ||||| | || | |||| | ||||| | || | || | | | || | ||
ACTTGAGCTTGAAGAGTACCGGGCAGAAGCCGCCCACCTAAAGAACCAACAAGCAACAATTAGGCGACTTGAGGAGCGAAACCGCCAACTAGAACAACAGgtctgttctgattctactcagttgcttgctctcttttcttagctagaattaagtctatttcttgttctttccatgaag-gaagtaaaaaaagataagttcg---
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G011219_T01 (Zea mays), 5'ss of exon 3
AGTGGAACTTGAGGAGTTCAGGACAGAGGCAACTCATCTAAAGAATCAACAGGCAACAATAAGAAGACTTGAAGAGCGTAATCGCCAGTTAGAACAACAGgttggtactg-attataacagttatggtagtaccagcaatacttcaaatttttattttccacttttgcactgcactggaatacttgcctaggccttaataa
| | || ||||| || | | | | || || | || | ||||| || ||||||||||| || |||||||||||||||||||||| | ||||| ||||| | ||| | | || || || |||| ||||| | | |||| | || || | | | | |
ACTAGAGCTTGAAGAATACCGTGCTGAAGCTGCACACTTGAAGAACCAGCAGGCAACAATTAGGCGACTTGAAGAGCGTAATCGCCAACTGGAACAGCAGgtcttttctgtacttctgtcaccatttagttatatgctctactattaatttatcgtacatgtctttgttttttttacttttatatgacattggtgttaca-
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G31920.1 (Glycine max), 5'ss of exon 5
AGTGGAACTTGAGGAGTTCAGGACAGAGGCAACTCATCTAAAGAATCAACAGGCAACAATAAGAAGACTTGAAGAGCGTAATCGCCAGTTAGAACAACAGgttggtactgattataacagttatggtagtaccagcaatacttcaaatttttattttccacttttgcactgcactggaatacttgcctaggccttaataa-----
||| || ||||||||||||||||||||||||||||| | |||||||| ||||| |||||| |||||||||||||| | || | || ||||| ||||||||| || || || | | ||| || | | | | | | | || ||| | | || | | || | ||||| |||
AGTTGAGCTTGAGGAGTTCAGGACAGAGGCAACTCACTTGAAGAATCAGCAGGCTACAATACGAAGACTTGAAGAGAGAAACAGGCAATTAGAGCAACAGgttattaatgcttctga----tattgtgtatatgattacatgttacagtctctttcatttcttgaggaaaatacctgt-tgagtgttgatgcctttatatgatgc
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G09890.2 (Glycine max), 5'ss of exon 4
AGTGGAACTTGAGGAGTTCAGGACAGAGGCAACTCATCTAAAGAATCAACAGGCAACAATAAGAAGACTTGAAGAGCGTAATCGCCAGTTAGAACAACAGgttggtactgattataacagttatggtagtaccagcaatacttcaaatttttattttccacttttgcactgcactggaatacttgcctaggccttaataa---------
||| || ||||||||||||||||||||||||||||| | |||||||| ||||| |||||| || ||||||||||| | || | || ||||| ||||||||| || || || | | | || || | || | | | | ||| |||| | ||| | ||||| || | ||||| |||
AGTTGAGCTTGAGGAGTTCAGGACAGAGGCAACTCACTTGAAGAATCAGCAGGCTACAATACGACGACTTGAAGAGAGAAACAGGCAATTAGAGCAACAGgttattaatgcttctgata-ttgtgtgtttgattacataatgttacagtttc--tttcatttcttg------aggaaaatacctgttgatgcctttatatgatgcttcc
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G18480.1 (Arabidopsis thaliana), 5'ss of exon 4
AGTGGAACTTGAGGAGTTCAGGACAGAGGCAACTCATCTAAAGAATCAACAGGCAACAATAAGAAGACTTGAAGAGCGTAATCGCCAGTTAGAACAACAGgttggtactgattataacagttatggtagtaccagcaatacttcaaatttttattttccacttttgcactgcactggaatacttgcctaggccttaataa---
||| |||||||||||||| |||||||| || |||||||| || ||||| ||||| ||||||||||| |||||||| || || |||||| | || |||||||| | || || |||| | | | | | ||| | || || || || || || | || | | ||
AGTTGAACTTGAGGAGTTTAGGACAGAAGCGACTCATCTTAAAAATCAGCAGGCCACAATAAGAAGGCTTGAAGAACGGAACCGCCAGCTTGAGCAACAGgtcagc-ttgcttttaacctct-tcttctaattgatatagggataaaactaaatgaatgtaaagcacagcttccttgattatttttc-agtctattctaggagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30301790|gb|CB978584.1|CB978584EST: AGGCAACAATAAGAAGACTTGAAGAGCGTAATCGCCAGTTAGAACAACAG ATGGAGGAGAAGGTGAAGGAAATTGTGGAAATGAAGCAACGCAGTTTGGCA
genomic: AGGCAACAATAAGAAGACTTGAAGAGCGTAATCGCCAGTTAGAACAACAGgttggtactg ... gcaagggcagATGGAGGAGAAGGTGAAGGAAATTGTGGAAATGAAGCAACGCAGTTTGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTGGAACTTGAGGAGTTCAGGACAGAGGCAACTCATCTAAAGAATCAACAGGCAACAATAAGAAGACTTGAAGAGCGTAATCGCCAGTTAGAACAACAGgttggtactgattataacagttatggtagtaccagcaatacttcaaatttttattttccacttttgcactgcactggaatacttgcctaggccttaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaatac