Sequence
atgc intronic sequence ATGC exonic sequenceAATCTTGAGGAAACACCAGTCTCCAAAGTTATGACAAGGAACCCAATTTTTGTTCTTTCTGATACTCTTGCTGTGGAAGCCCTGCAAAAGATGGTGCAAGgttgctgataacctgaaaaccatgtttactttttccatccaacatgctattctacaacttgccaactgaacactgtgctgattttttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G38140.1 (Glycine max), 5'ss of exon 3
AATCTTGAGGAAACACCAGTCTCCAAAGTTATGACAAGGAACCCAATTTTTGTTCTTTCTGATACTCTTGCTGTGGAAGCCCTGCAAAAGATGGTGCAAGgttgctgataacctgaaaaccatgtttactttttccatccaacatgctattctacaacttgccaactgaacactgtgctgatttt--ttgcag
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AATCTCGAAGAAACACCTGTTTCCAAGGTTATGACAAGGAATCCAGTATTTGTCCTTTCTGATACTCGTGCTGTGGAAGCCCTCCAAAAGATGGTGCAAGgttggtattacacggagataggcacatgctaattac---tatttcggtacggtgccctttg---aataaatacaaagatgattatgttttcag
upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G37370.3 (Glycine max), 5'ss of exon 4
AATCTTGAGGAAACACCAGTCTCCAAAGTTATGACAAGGAACCCAATTTTTGTTCTTTCTGATACTCTTGCTGTGGAAGCCCTGCAAAAGATGGTGCAAGgttgctgataacctgaaaaccatgtttactttttccatccaacatgctattctacaacttgccaactgaacactgtgctgat---tttttgcag
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AATCTTGAAGAGACACCAGTTTCCAAAGTCATGACTAGGAATCCGGTATTTGTTCTTTCTGAAACTCTTGCTGCAGAAGCCCTCCAAAAGATGGTGCAAGgttggtagtgtatatagagaaacac--aacttttcaagttagt-tacttttctgtatcctgccttttgaatacatggctgatatatgttgacag
upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G01470.1 (Glycine max), 5'ss of exon 2
AATCTTGAGGAAACACCAGTCTCCAAAGTTATGACAAGGAACCCAATTTTTGTTCTTTCTGATACTCTTGCTGTGGAAGCCCTGCAAAAGATGGTGCAAGgttgctgataacctgaaaaccatgtttact--ttttccatccaacatgctattctacaacttgccaactgaacactgtgctgattttttgcag
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AATCTCGAAGAAACACATGTTTCCAAGGTTATGACAAGGAATCCAGTATTTGTCCTTTCTGACGCTCTTGCTGTTGAAGCCCTCCAAAAGATGGTGCAAGgttggtattactcggagataggcacatgctaatttctatttctgtatggtgccattggaataagta--caaagatcatttatgttttcag---
upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G17720.1 (Glycine max), 5'ss of exon 2
AATCTTGAGGAAACACCAGTCTCCAAAGTTATGACAAGGAACCCAATTTTTGTTCTTTCTGATACTCTTGCTGTGGAAGCCCTGCAAAAGATGGTGCAAGgttgctgataacctgaaaaccatgtttactttttccatccaacatgctattctacaacttgccaactgaacactgtgctgattttttgcag
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AATCTTGAAGAGACACCAGTTTCCAAAGTTATGACTAGGAATCCGGTATTTGTCCTTTCTGAAACTCTAGCTGCAGAAGCCCTCCAAAAGATGGTGCAAGgttggtagtgtatatagagaaacattcaacttttcaag-----------------------------------------------------
upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G50530.1 (Arabidopsis thaliana), 5'ss of exon 4
AATCTTGAGGAAACACCAGTCTCCAAAGTTATGACAAGGAACCCAATTTTTGTTCTTTCTGATACTCTTGCTGTGGAAGCCCTGCAAAAGATGGTGCAAGgttgctgataacctgaaaaccatgtttactttttccatccaacatgctattctacaacttgccaactgaacactgtgctgattttttgcag
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AACCTTGAAGAAACACCTGTATCTAAAGTTATGACCAAGAACCCTGTTTTTGTTTTGTCTGATACTATTGCTGTTGAAGCTCTTCAAAAGATGGTTCAAGgtttgttatttcttgt---tcttttataagttctttgttggtcttggtacttga------gctgactagtggatatgcag-----------
upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G63490.1 (Arabidopsis thaliana), 5'ss of exon 4
AATCTTGAGGAAACACCAGTCTCCAAAGTTATGACAAGGAACCCAATTTTTGTTCTTTCTGATACTCTTGCTGTGGAAGCCCTGCAAAAGATGGTGCAAGgtt--gctgataacctgaaaaccatgtttactt--tttccatccaacatgctat-tctacaac-ttgccaa--ctgaacactgtgctgattttttgcag
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AATGTCGAGGAAACACCTGTATCTAAGGTTATGACGAAGAACCCAATGTTTGTTCTCTCAGAAACACTTGCTGTTGAAGCTCTCCAAAAGATGGTCCAAGgtttgtctcattgtttttaagctagagaaacttgatgtttatctgat-tgctgtgtctagatccttaatgaggctatatcttaaccttacctactgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26264368|gb|CA815431.1|CA815431EST: TGCTC-TTCTGATACTCTTGCTGTGGAAGCCCTGCAAAAGATGGTGCAAG GAAAGTTCAGACATTTGCCTGTTGTAGAGAATGGGGAGGTCATTGCTTTAC
genomic: TGTTCTTTCTGATACTCTTGCTGTGGAAGCCCTGCAAAAGATGGTGCAAGgttgctgata ... ttttttgcagGAAAGTTCAGACATTTGCCTGTTGTAGAGAATGGGGAGGTCATTGCTTTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATCTTGAGGAAACACCAGTCTCCAAAGTTATGACAAGGAACCCAATTTTTGTTCTTTCTGATACTCTTGCTGTGGAAGCCCTGCAAAAGATGGTGCAAGgttgctgataacctgaaaaccatgtttactttttccatccaacatgctattctacaacttgccaactgaacactgtgctgattttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG