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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGATATGTGGCTGGTATATTATGTGCTATCGTGTCACACCCTGCTGACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaactaacttcttatcgatttgatggatctatatatacacctctccccttgatctcacccactttgttttgatgtatttccatggtgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g00400.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g00400.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ31006 (Selaginella moellendorffii), 5'ss of exon 4
TGGTGGATATGTGGCTGGTATATTATGTGCTATCGTGTCACACCCTGCTGACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaactaactt-cttatcgatttgatggatctatatatacacctctccccttgatctcacccactttgttttgatgtatttccatggtgcag
||| || ||  | ||||| || || || |||||||| || ||||||||||||||||| ||||| || || |||||| ||||||  || ||  | ||  | ||  ||   ||   || ||| | | | |  ||    ||| |    | || |  |                                           
TGGCGGTTACATTGCTGGAATTTTTTGCGCTATCGTCTCGCACCCTGCTGACAACCTTGTCTCGTTCCTCAACAATACCAAGGACGCAACCATTGGCCAAgtctgtatccttgtttgcttcttgttct--tgcgcttatttcgttatcttttgctccag--------------------------------------

upper sequence: Vv17s0000g00400.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ34707 (Selaginella moellendorffii), 5'ss of exon 4
TGGTGGATATGTGGCTGGTATATTATGTGCTATCGTGTCACACCCTGCTGACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaactaacttcttatcgatttgatggatctatatatacacctctccccttgatctcacccactttgttttgatgtatttccatggtgcag
||| || ||  | ||||| || || || |||||||| || ||||||||||||||||| ||||| || || |||||| ||||||  || ||  | ||  | ||  ||   ||   ||  | ||   ||  ||    ||| |    | || |  |                                           
TGGCGGTTACATTGCTGGAATTTTTTGCGCTATCGTCTCGCACCCTGCTGACAACCTTGTCTCGTTCCTCAACAATACCAAGGACGCAACCATTGGCCAAgtatgtatccttgttttct-tcttgttcttgcgcttatttcgttatcttttgctccag--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110419582|gb|EC985821.1|EC985821
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|22015508|gb|BQ800542.1|BQ800542
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|110394034|gb|EC958407.1|EC958407
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|30305673|gb|CB982467.1|CB982467
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|160482081|gb|EY255058.1|EY255058
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|110411522|gb|EC977239.1|EC977239
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|161715501|gb|FC067093.1|FC067093
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|110706767|gb|EE082591.1|EE082591
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|110405066|gb|EC970596.1|EC970596
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT