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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTAAATAATCACTCTGATGGATCTGAGTCTGGCTCCTTGTTGCATACCATGAACCACACTCTTACCATATTTGGTTCGAGACTTCTTAGGCACTGGgtatgagatattgctcttgcaattttggtcttcattttcgtgaatttgatttttgagttatactgcatggcacag

Basic information

species Vitis vinifera
transcript Vv16s0100g01310.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g01310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G29680.1 (Glycine max), 5'ss of exon 4
GTTCTAAATAATCACTCTGATGGATCTGAGTCTGGCTCCTTGTTGCATACCATGAACCACACTCTTACCATATTTGGTTCGAGACTTCTTAGGCACTGGgtatgagat------attgctcttgcaat--tttggtcttca-ttttcg--tgaatttgatttttgagttatactgcatggcacag-------------------------
||| |||| ||| ||  ||||||||||||    || || ||| |||| |  ||||| |  |||||||| |||||||| || || ||||||||||| |||||||||| |      ||| ||| | |||   ||   | || | || ||    |  |||  ||| | ||  | |    |   | |                           
GTTTTAAAAAATAACAGTGATGGATCTGAAATCGGTTCTTTGCTGCAAATTATGAATCGTACTCTTACTATATTTGGCTCCAGGCTTCTTAGGCATTGGgtatgaggtgcttccattcctcatacaaccattgaatgttgaattctcaaccgccttttctttatcagccaaagaagacccctctttaattgttgtttttgcatgatacag

upper sequence: Vv16s0100g01310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G25540.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTCTAAATAATCACTCTGATGGATCTGAGTCTGGCTCCTTGTTGCATACCATGAACCACACTCTTACCATATTTGGTTCGAGACTTCTTAGGCACTGGgtatgagatattgctcttgcaattttggtcttcattttcgtgaatttgatttttgagttatactgcatggcacag---------------------------
||| | || ||| | || |||||||| || ||||||||||| || ||||  ||||| ||||| |||||  ||| |||||| || |||||||| ||||||||| || | | | |||||    | || |  ||         |   ||  ||| |  ||  | ||  | |   |||                           
GTTGTGAAAAATAATTCAGATGGATCGGAATCTGGCTCCTTATTCCATAATATGAATCACACACTTACAGTATATGGTTCCAGGCTTCTTAGACACTGGgtaagacacaat-ctcttttcttcttagattttccgcaaaagggctttgtttatttgtagttctata-gatgcagtaagtcgtcttatagtaaagaaaaaaa