Sequence
atgc intronic sequence ATGC exonic sequenceATGGGAAAATATTAAACATAAGGATCAGAAGGAATTTTGCATTTATTCAGTATGAATCACAAGAGGATGCCACTAGAGCATTGGAGGCTACAAACATGAGgtcgattctcctcatttttctttgactttttattctgtacatgattgttagttttgtagcattatatattgcatgaaaaaaatcttgctgctacatgtttactgtttaagggctcattttattatgaatgtttagtagcttttttatgatgatttttctgtttattctggatgtacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0100g00450.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G29460.1 (Glycine max), 5'ss of exon 4
ATGGGAAAATATTAAACATAAGGATCAGAAGGAATTTTGCATTTATTCAGTATGAATCACAAGAGGATGCCACTAGAGCATTGGAGGCTACAAACATGAGgtcgattctcctcatttttctttgactttttattctgtacatgattgttagttttgtagcattatatattgcatgaaaaaaatcttgctgctacatgtttactgtttaagggctcattttattatgaatgtttagtagcttttttatgatgatttttctgtttattctggatgtacag
|||| || ||| | | | |||||||||||||||||||| ||| |||| ||||||||| | || ||||| | |||||| |||| |||||||| ||||||| || | | |||| | ||| || ||| | | | || ||| ||| | | || || || | | || | | | ||| | | |
ATGGAAAGATAGTTAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAATATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGgtgagttaa-------tgtatttggatatttgtttcaaaca-gttaagcatttctgtttcat-gtttctttca-----aatctgtcattggccactagtcattgtatgaccaat----------------------------------------------------------------
upper sequence: Vv16s0100g00450.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G38400.1 (Glycine max), 5'ss of exon 5
ATGGGAAAATATTAAACATAAGGATCAGAAGGAATTTTGCATTTATTCAGTATGAATCACAAGAGGATGCCACTAGAGCATTGGAGGCTACAAACATGAGgtcgattctcctcatttttctttgactttttattctgtacatgattgttagttttgtagcattatatattgcatgaaaaaaatcttgctgctacatgtttactgtttaagggctcattttattatgaatgtttagtagcttttttatgatgatttttctgtttattctggatgtacag
|||| || || | | | |||||||||||||||||||| ||| |||| ||||||||| | || ||||| | |||||| |||| |||||||| ||||||| || | | |||| | ||| || ||| | | | ||||||| || || || |||||| | | | || | | | ||
ATGGAAAGATTGTCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAATATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGgtaagttaa-------tgtatttggatatttgtttcagaca-gttaagcatttttgtatcaagattctttc--------aaatct-gtcattggccactagtcattgcatgaccaat-------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964582|gb|GW838385.1|GW838385EST: TATGAATCACAAGAGGATGCCACTAGAGCATTGGAAGCTACAAACATGAG CAAGTTGATGGATCGAGTTATTTCAGTGGAATATGCAGTTCGAGATGAT
genomic: TATGAATCACAAGAGGATGCCACTAGAGCATTGGAGGCTACAAACATGAGgtcgattctc ... ggatgtacagCAAGTTGATGGATCGAGTTATTTCGGTGGAATATGCAGTTCGAGATGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGGAAAATATTAAACATAAGGATCAGAAGGAATTTTGCATTTATTCAGTATGAATCACAAGAGGATGCCACTAGAGCATTGGAGGCTACAAACATGAGgtcgattctcctcatttttctttgactttttattctgtacatgattgttagttttgtagcattatatattgcatgaaaaaaatcttgctgctacatgtttactgtttaagggctcattttattatgaatgtttagtagcttttttatgatgatttttctgtttattctggatgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG