1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATGTGAGAGATGAGGCTGCCAGGGTCATGATTGCTGCTCCACTGATGGCTTTTGTGACTACCCATATCTTGTATCTGAACTTCTACAAACTTGATTATGgtaacccctcttccaatatcctccatttgttgaacttatgcagcattgtacatcactatacaaaactaccagcacaattacatttagttatggaatattg...
species | Vitis vinifera |
transcript | Vv16s0100g00360.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTTGTGACTACCCATATCTTGTATCTGAACTTCTACAAACTTGATTATG GTTTGAACATGAAAGTGTGTTTGACCATGGGCATAGCTCAACTTCTTTTGTEST: gi|77588244|gb|DV223331.1|DV223331
genomic: TTTTGTGACTACCCATATCTTGTATCTGAACTTCTACAAACTTGATTATGgtaacccctc ... aatattgcagGTTTGAACATGAAAGTGTGTTTGACCATGGGCATAGCTCAACTTCTTTTGT
EST: TTTTGTGACTACCCATATCTTGTATCTGAACTTCTACAAACTTGATTATG GTTTGAACATGAAAGTGTGTTTGACCATGGGCATAGCTCAACTTCTTTTGTEST: gi|34545861|gb|CF514093.1|CF514093
genomic: TTTTGTGACTACCCATATCTTGTATCTGAACTTCTACAAACTTGATTATGgtaacccctc ... aatattgcagGTTTGAACATGAAAGTGTGTTTGACCATGGGCATAGCTCAACTTCTTTTGT
EST: TTTTGTGACTACCCATATCTTGTATCTGAACTTCTACAAACTTGATTATG GTTTGAACATGAAAGTGTGTTTGACCATGGGCATAGCTCAACTTCTTTTGT
genomic: TTTTGTGACTACCCATATCTTGTATCTGAACTTCTACAAACTTGATTATGgtaacccctc ... aatattgcagGTTTGAACATGAAAGTGTGTTTGACCATGGGCATAGCTCAACTTCTTTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGTGAGAGATGAGGCTGCCAGGGTCATGATTGCTGCTCCACTGATGGCTTTTGTGACTACCCATATCTTGTATCTGAACTTCTACAAACTTGATTATGgtaacccctcttccaatatcctccatttgttgaacttatgcagcattgtacatcactatacaaaactaccagcacaattacatttagttatggaatattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacaaa