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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACATGGGCTTGCTGAATATATAGCCCAGgtaagaatttgattctacatcttagtttacctctttccaaaatgttgacaaaatgatgcccatcattaaaaattttctctggccactcggttttgctgattgtag

Basic information

species Vitis vinifera
transcript Vv16s0098g01880.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718650|gb|FC068226.1|FC068226
EST:     ACACATGGGCTTGCTGAATATATAGCCCAG                         GAGGAGATGGATAGGAAGAATGGGTACTGGTGGTCACTGGACAGTAGATTC
genomic: ACACATGGGCTTGCTGAATATATAGCCCAGgtaagaattt ... ctgattgtagGAGGAGATGGATAGGAAGAATGGGTACTGGTGGTCACTGGACAGTAGATTC
EST: gi|161711730|gb|FC059978.1|FC059978
EST:     ACACATGGGCTTGCTGAATATATAGCCCAG                         GAGGAGATGGATAGGAAGAATGGGTACTGGTGGTCACTGGACAGTAG
genomic: ACACATGGGCTTGCTGAATATATAGCCCAGgtaagaattt ... ctgattgtagGAGGAGATGGATAGGAAGAATGGGTACTGGTGGTCACTGGACAGTAG
EST: gi|161713891|gb|FC062864.1|FC062864
EST:     ACACATGGGCTTGCTGAATATATAGCCCAG                         GAGGAGATGGATAGGAAGAATGGGTACTGGTGGTCACTGGACAGTAGATTC
genomic: ACACATGGGCTTGCTGAATATATAGCCCAGgtaagaattt ... ctgattgtagGAGGAGATGGATAGGAAGAATGGGTACTGGTGGTCACTGGACAGTAGATTC