Sequence
atgc intronic sequence ATGC exonic sequenceTTTTATCTAAAGAAGACACTGAAACCTTAAATTTATGCAAAAGCATGATGGGAAGAGGAGAATGGCCACCTCTTATGGTTGTTTTTGATCCTAAAGAAGGgtgagtgcagttctcaatgttcattctttcattgatgggattttcttgtataattttttttttttaaaaaatagggatatttaacctggcctgattatttgatttcaatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g01510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G52260.1 (Glycine max), 5'ss of exon 4
TTTTATCTAAAGAAGACACTGAAACCTTAAATTTATGCAAAAGCATGATGGGAAGAGGAGAATGGCCACCTCTTATGGTTGTTTTTGATCCTAAAGAAGGgtgagtgcagttctcaatgttcattctttcattgatgggattttcttgtataattttttttttttaaaaaatagggatatttaacctggcctgattatttgat--ttcaatag-
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TCTTGTCAAAAGAAGACACCGAGACCTTAAACCTGTGCAAAAGTATGATGGAAAGAGGAGAATGGCCGCCTCTCATGGTTGTTTTTGATCCTCTAGAAGGgtatgtata---tgcagcataaa--ctggcattgtccttgtctcctta-ata------tttggctgagaaacgcagcgaat--acatagtagtagtactcaatagctcaacaat
upper sequence: Vv16s0098g01510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G10600.1 (Glycine max), 5'ss of exon 4
TTTTATCTAAAGAAGACACTGAAACCTTAAATTTATGCAAAAGCATGATGGGAAGAGGAGAATGGCCACCTCTTATGGTTGTTTTTGATCCTAAAGAAGGgtgagtgcagttc-------tcaatgttcattctttcattgatgggattttcttgtataat-----tttttttttttaaa----aaatagggatatttaacctggcctg------attatttgat--ttcaatag-------------------------------------------
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TTTTGTCAAAAGAAGACACCGAGACCTTAAACCTGTGCAAGCGTATGATGGAAAGAGGAGAATGGCCACCACTCATGGTTGTTTTTGATCCTCTAGAAGGgtatgtatattcagcgtaaactggcattgtctttctcctcaatatgcagctcatacatagtagtagtattactcactatagctcaacaactgacacataatatgctctgccaccaaataaataagcattcaacagcaatcccaattttgacatcacaaataaatttctctttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110417749|gb|EC983830.1|EC983830EST: GGAAGAGGAGAATGGCCACCTCTTATGGTTGTTTTTGATCCTAAAGAAGG GTTCACAGTTGAGGCAGATAGGTTCATAAAAGATCTAACAATAATAACAGA
genomic: GGAAGAGGAGAATGGCCACCTCTTATGGTTGTTTTTGATCCTAAAGAAGGgtgagtgcag ... atttcaatagGTTCACAGTTGAGGCAGATAGGTTCATAAAAGATCTAACAATAATAACAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTATCTAAAGAAGACACTGAAACCTTAAATTTATGCAAAAGCATGATGGGAAGAGGAGAATGGCCACCTCTTATGGTTGTTTTTGATCCTAAAGAAGGgtgagtgcagttctcaatgttcattctttcattgatgggattttcttgtataattttttttttttaaaaaatagggatatttaacctggcctgattatttgatttcaatag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG