1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTGTCATTTTGTCATCATGGTCTGAAAACTACGGTGATCCTTCAGAGAACAAGGACTTGCTTACACAGTTCAAGGGAGCTGCTGTTGCCATAGCTTCTGgtaggttcccaaagcttttcattgtatgcattgatcctatcttatatgatatcatagcctatgaatacccatggagtagaccttgaaactctacatacat...
species | Vitis vinifera |
transcript | Vv16s0098g01290.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAGGACTTGCTTACACAGTTCAAGGGAGCTGCTGTTGCCATAACTTCTG ATGAGAAAATTGCGTTGCTGGGTGCAATTCAGTCGTTGTTTGAAGGCTCAAEST: gi|33402269|gb|CF207896.1|CF207896
genomic: CAAGGACTTGCTTACACAGTTCAAGGGAGCTGCTGTTGCCATAGCTTCTGgtaggttccc ... tgtggttcagATGAGAAAATTGCGTTGCTGGGTGCAATTCAGTCGTTGTTTGAAGGCTCAA
EST: CAAGGACTTGCTTACACAGTTCAAGGGAGCTGCTGTTGCCATAGCTTCTG ATGAGAAAATTGCGTTGCTGGGTGCAATTCAGTCGTTGTTTGAAGGCTCAAEST: gi|33408764|gb|CF214391.1|CF214391
genomic: CAAGGACTTGCTTACACAGTTCAAGGGAGCTGCTGTTGCCATAGCTTCTGgtaggttccc ... tgtggttcagATGAGAAAATTGCGTTGCTGGGTGCAATTCAGTCGTTGTTTGAAGGCTCAA
EST: CAAGGACTTGCTTACACAGTTCAAGGGAGCTGCTGTTGCCATAGCTTCTG ATGAGAAAATTGCGTTGCTGGGTGCAATTCAGTCGTTGTTTGAAGGCTCAAEST: gi|110380688|gb|EC945972.1|EC945972
genomic: CAAGGACTTGCTTACACAGTTCAAGGGAGCTGCTGTTGCCATAGCTTCTGgtaggttccc ... tgtggttcagATGAGAAAATTGCGTTGCTGGGTGCAATTCAGTCGTTGTTTGAAGGCTCAA
EST: CAAGGACTTGCTTACACAGTTCAAGGGAGCTGCTGTTGCCATAGCTTCTG ATGAGAAAATTGCGTTGCTGGGTGCAATTCAGTCGTTGTTTGAAGGCTCAAEST: gi|161706612|gb|FC057230.1|FC057230
genomic: CAAGGACTTGCTTACACAGTTCAAGGGAGCTGCTGTTGCCATAGCTTCTGgtaggttccc ... tgtggttcagATGAGAAAATTGCGTTGCTGGGTGCAATTCAGTCGTTGTTTGAAGGCTCAA
EST: CAAGGACTTGCTTACACAGTTCAAGGGAGCTGCTGTTGCCATAGCTTCTG ATGAGAAAATTGCGTTGCTGGGTGCAATTCAGTCGTTGTTTGAAGGCTCAA
genomic: CAAGGACTTGCTTACACAGTTCAAGGGAGCTGCTGTTGCCATAGCTTCTGgtaggttccc ... tgtggttcagATGAGAAAATTGCGTTGCTGGGTGCAATTCAGTCGTTGTTTGAAGGCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTCATTTTGTCATCATGGTCTGAAAACTACGGTGATCCTTCAGAGAACAAGGACTTGCTTACACAGTTCAAGGGAGCTGCTGTTGCCATAGCTTCTGgtaggttcccaaagcttttcattgtatgcattgatcctatcttatatgatatcatagcctatgaatacccatggagtagaccttgaaactctacatacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagtaga