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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAGAATTCTCGGGATGCGGAAGATGCAATTAGGGGTCGTGATGGCTATAATTTTGATGGTTGTCGTCTGAGGgtaataagactttccaactattttcttgtgtatttcattttattttcccttaattgattcttctttgacggctaatgcag

Basic information

species Vitis vinifera
transcript Vv16s0098g01020.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G40740.2 (Glycine max), 5'ss of exon 4
TTTGAGAATTCTCGGGATGCGGAAGATGCAATTAGGGGTCGTGATGGCTATAATTTTGATGGTTGTCGTCTGAGGgtaataagactttccaactattttcttgtgtatttcattttattttcccttaattgattcttctttgacggctaatgcag
||||| ||| |||| ||||| |||||||||||| ||||||| ||||| || || ||||||||||||||  | || ||||  ||   |||||||| ||  ||||     |  |  |  ||||   |    ||  || ||| |    | |   |   
TTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGAgtaaggagctgttccaacttttgacttgcaatgtataaatacttttgaatggtatgtctcatctgttcttgttgtag---

upper sequence: Vv16s0098g01020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G14060.3 (Glycine max), 5'ss of exon 4
TTTGAGAATTCTCGGGATGCGGAAGATGCAATTAGGGGTCGTGATGGCTATAATTTTGATGGTTGTCGTCTGAGGgtaataagactttccaactattttcttgtgtatttcattttattttcccttaattgattcttctttgacggctaatgcag
||||| ||| |||| ||||| |||||||||||| ||||||| ||||| || || ||||||||||||||  | || ||||  ||   |||||||| ||  |||| |   |  ||  |||  |     |    ||   |  |       |  || ||
TTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGAgtaaggagctgttccaacttttgacttgcgaggtatatactatacttttcaatggtatgtctgatctgttcttgttgtag