1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGTTTTCTGCTTTTGGATTTGTGCATAAGATCACTACCTTTGAGAAGACAGCCGGATTCCAGgtttataaatttaactcagttctgttgtggtttctattaatgggttcttctacctccaaacatgagtttgtgctatatctttgtcag
species | Vitis vinifera |
transcript | Vv16s0050g02640.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGATTTGTGCATAAGATCACTACCTTTGAGAAGACAGCCGGATTCCAG GCTTTGGTGCAATTTTCAGATTCAGAAACTGCCTCTGCTGCAAAAAATGCCEST: gi|33404632|gb|CF210259.1|CF210259
genomic: TTGGATTTGTGCATAAGATCACTACCTTTGAGAAGACAGCCGGATTCCAGgtttataaat ... tctttgtcagGCTTTGGTGCAATTTTCAGATTCAGAAACTGCCTCTGCTGCAAAAAATGCC
EST: TTGGATTTGTGCATAAGATCACTACCTTTGAGAAGACAGCCGGATTCCAG GCTTCGGTGCAATTTTCAGATTCAGAAACTGCCTCTGCTGCAAAAAATGCCEST: gi|110694551|gb|EE071754.1|EE071754
genomic: TTGGATTTGTGCATAAGATCACTACCTTTGAGAAGACAGCCGGATTCCAGgtttataaat ... tctttgtcagGCTTTGGTGCAATTTTCAGATTCAGAAACTGCCTCTGCTGCAAAAAATGCC
EST: TTGGATTTGTGCATAAGATCACTACCTTTGAGAAGACAGCCGGATTCCAG GCTTTGGTGCAATTTTCAGATTCAGAAACTGCCTCTGCTGCAAAAAATGCCEST: gi|161717303|gb|FC069189.1|FC069189
genomic: TTGGATTTGTGCATAAGATCACTACCTTTGAGAAGACAGCCGGATTCCAGgtttataaat ... tctttgtcagGCTTTGGTGCAATTTTCAGATTCAGAAACTGCCTCTGCTGCAAAAAATGCC
EST: TTGGATTTGTGCATAAGATCACTACCTTTGAGAAGACAGCCGGATTCCAG GCTTTGGTGCAATTTTCAGATTCAGAAACTGCCTCTGCTGCAAAAAATGCC
genomic: TTGGATTTGTGCATAAGATCACTACCTTTGAGAAGACAGCCGGATTCCAGgtttataaat ... tctttgtcagGCTTTGGTGCAATTTTCAGATTCAGAAACTGCCTCTGCTGCAAAAAATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTTCTGCTTTTGGATTTGTGCATAAGATCACTACCTTTGAGAAGACAGCCGGATTCCAGgtttataaatttaactcagttctgttgtggtttctattaatgggttcttctacctccaaacatgagtttgtgctatatctttgtcag
- - - - - - - - - - - - - - AGATCA