1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTCCGGCTCTCAACCTATGGTCTGTTTTGGATTAGGCATGCCATCATGCGCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCGgtatgctttctcccttcccaatttgattatcttggaattatggggtttcatcatttttcaacttgtgcaatgctggaaataattttgaattgtctgatta...
species | Vitis vinifera |
transcript | Vv16s0050g02520.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTCCATGACACTCTCAAGCTTTATACGCGTCTCCTTTGGCCTTGAGTCG GTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAAEST: gi|161721747|gb|FC071120.1|FC071120
genomic: GCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCGgtatgctttc ... atttctgcagGTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAA
EST: GCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCG GTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAAEST: gi|28964721|gb|CB343754.1|CB343754
genomic: GCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCGgtatgctttc ... atttctgcagGTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAA
EST: GCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCG GTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAAEST: gi|34550673|gb|CF518891.1|CF518891
genomic: GCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCGgtatgctttc ... atttctgcagGTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAA
EST: GCTCCATGACACTCTCAAGCTTTATACGCGTCTCCTTTGGCCTTGAGTCG GTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAAEST: gi|110719640|gb|EE094946.1|EE094946
genomic: GCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCGgtatgctttc ... atttctgcagGTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAA
EST: GCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCG GTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAAEST: gi|28964869|gb|CB343902.1|CB343902
genomic: GCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCGgtatgctttc ... atttctgcagGTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAA
EST: GCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCG GTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAA
genomic: GCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCGgtatgctttc ... atttctgcagGTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCCGGCTCTCAACCTATGGTCTGTTTTGGATTAGGCATGCCATCATGCGCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCGgtatgctttctcccttcccaatttgattatcttggaattatggggtttcatcatttttcaacttgtgcaatgctggaaataattttgaattgtctgatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa