Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATTCAGTGAAATGTGAAGTTGTTGATGGTGGAGAACTCAAGTCTAGAAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGgttggacatggaatgagtccccaatgtttatagcaaatgctttgttttgcaattcaaaataacaatttgctttgatttgctgcag

Basic information

species Vitis vinifera
transcript Vv16s0050g02180.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G152686_T01 (Zea mays), 5'ss of exon 4
GGAGATTCAGTGAAATGTGAAGTTGTTGATGGTGGAGAACTCAAGTCTAGAAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGgttggacatggaatgagtccccaatgtttatagcaaatgctttgttttgcaattcaaaataacaatttgctttgatttgctgcag
| |||||| ||||||||||||||| |||| ||||| ||| | || |||||  | ||||| |||||||| ||||| ||||||||  |||||||||| ||||||   |   || |  | |      ||| ||  | |  |  | | | |  |  |     |||    |||      || | | |   
GAAGATTCTGTGAAATGTGAAGTTATTGACGGTGGTGAATTGAAATCTAGGCGCCATCTGAATGTTCGTGGAAAGAGTGCAACCTTGCCATCAATAACTGgtaatagtcggca--acttttttctgtctactggatctaatctatatatccttgtttcatacacgttt---caaatgtacag---

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G30430.1 (Glycine max), 5'ss of exon 4
GGAGATTCAGTGAAATGTGAAGTTGTTGATGGTGGAGAACTCAAGTCTAGAAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGgttggacatggaatgagt-ccccaatgtttatagcaaatgctttgttttgcaattcaaaataacaatttgctttgatttgctgcag---------------------------------------------------------------------------
|  ||||| ||||||||||||||||||||||| ||||| |||||||| || || ||| | |||||| |||||||||||||||||||||| || || ||||||| ||    | || | |   || ||  ||  |     |  ||  ||||  |        |    ||     |  || || |   |                                                                           
GAGGATTCTGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCAAGGAGACATTTGAATGTTAGAGGAAAAAGTGCAACACTGCCTTCCATAACTGgttagattctggatcattattcctatacttg-attgtttttttaattttaaaccatttcttctacatgcctctccatatgtttgggtactggcaaatgggtgaggattaaggttttgttggtttcccaaggacatataatatttgtgttgatttgctacag

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 4
GGAGATTCAGTGAAATGTGAAGTTGTTGATGGTGGAGAACTCAAGTCTAGAAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGgttggacatggaatgagt-------ccccaatgtttatagcaaatgctttgttttgcaattcaaaataacaatttgctttgatttgctgcag----------------------------------------------------------------------
|  ||||| ||||||||||||||||||||||| ||||| |||||||| || || ||| | |||||| ||||||||||||||||||| || || || ||||||| ||    | || | |        |   ||  ||      |||| |||||       ||| | ||  |  |    | |  || | | | |                                                                      
GAGGATTCTGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCAAGGAGACATTTGAATGTTAGAGGAAAAAGTGCAACACTTCCTTCCATCACTGgttagattccggattattatttctatcttgattatttcttttaatg-tttgtccatttcttctacatgcctctcca-tatatttgggtactgacaactgggtgagggttaaggttttgttggtttcccaaggacatataatatttgtgttgatttgctacag

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 4
GGAGATTCAGTGAAATGTGAAGTTGTTGATGGTGGAGAACTCAAGTCTAGAAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGgttgga---catggaatgagtccc--------caatgttt--atagcaaatgctttgt----tttgcaattcaaaataaca-atttgctttgatttgctgcag--------------------------------------------
|  ||||| ||||||||||||||||||||||| ||||| |||||||| ||  | ||| | || ||| ||||||||||||||||||| || ||||| ||||||  ||   ||    |||| ||||        ||||| |    |  | | | ||||||     |||   | |     |    | |||||  |  ||| ||                                               
GAGGATTCTGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCAAGGCGACATTTGAACGTTAGAGGAAAAAGTGCAACACTACCTTCAATCACTGgtcagaattcagattatgaatcccaatcttgacaatgctctagtgtctatttctttgtgtgccttgagttgcgtgggagggtagttgctcaggattgatgttatggtggtttcctatggacataatattcacattaatttgttgcag

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G23150.1 (Glycine max), 5'ss of exon 4
GGAGATTCAGTGAAATGTGAAGTTGTTGATGGTGGAGAACTCAAGTCTAGAAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGgttggacatggaatga--gtccccaatgtt--------tatagcaaatgctttgttttgcaattcaaaata--------acaatttgctttgatttgctgcag--------------------------------------------
   ||||| ||||||||||||||||||||||| ||||| |||||||| ||  | ||| | || ||| |||||||||||||||| ||||| ||||| ||||||  ||  |   || |  |  |||||| ||        | | |    |  ||  || ||    || |  |            | |||||  |  ||| ||                                               
AAGGATTCTGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCAAGGCGACATTTGAACGTTAGAGGAAAAAGTGCAACTCTGCCTTCAATCACTGgtcagaattcagattattgatcccaatcttgacgatgctctggtgtctatttctttgtgtgcctctagttgtgtgggagggtagttgctcaggattgatgttatggtggcttcctatggacataatattcacattaatttgttgcag

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G24270.1 (Glycine max), 5'ss of exon 4
-----------------------------------GGAGATTCAGTGAAATGTGAAGTTGTTGATGGTGGAGAACTCAAGTCTAGAAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGgttggacatggaatgagtccccaatgtttatagcaaatgctttgttttgcaattcaaaataacaatttgctttgatttgctgcag
                                      ||||| |||||||||| |||||||||||| ||||| |||||||| ||  |   | | |||||| |||| |||||||| ||||| || ||||||||||    |                                                                                
ATGGTATGATGTCTATGGTTGTTAAGTCTACGACAAAGGATTCTGTGAAATGTGCAGTTGTTGATGGAGGAGAGCTCAAGTCAAGgtgaattttgaatgttagagggaaaagtgctacactaccttcaattactgagaag--------------------------------------------------------------------------------

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAGATTCAGTGAAATGTGAAGTTGTTGATGGTGGAGAACTCAAGTCTAGAAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGgtt-ggacatggaatgagtccccaatgt---ttatagcaaatgctttgttt-------tgcaattcaaaat----aacaatttgctttg------atttgctgcag-----------------
  ||| || || ||||||||||||||||||||||||||||| ||||| || || || || ||||| |||||||| ||||||||  | || ||||| ||||||| | |  |    |    || |  | |   || |      ||||||| ||       ||||  |  || |    || |  || || ||      ||||  || |                  
AAAGACTCTGTCAAATGTGAAGTTGTTGATGGTGGAGAACTTAAGTCAAGGAGACACCTGAATGTCCGAGGAAAGAGTGCAACTTTACCTTCAATCACTGgttcgaattttctgtttaccctctttttcactttttcttgttgctttggttgaagtgttgcatatttaagtctgaaagatcttactctgatgcttattttttgtaattattttcttgccgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110688927|gb|EE068039.1|EE068039
EST:     AAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTG                         AAAAGGACTGGGATGATATCAAGTTTGGTGTTGACAATAAAGTGGACTTTT
genomic: AAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGgttggacatg ... tttgctgcagAAAAGGACTGGGATGATATCAAGTTTGGTGTTGACAATAAAGTGGACTTTT
EST: gi|110698146|gb|EE075377.1|EE075377
EST:     AAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTG                         AAAAGGACTGGGATGATATCAAGTTTGGTGTTGACAATAAAGTGGACTTTT
genomic: AAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGgttggacatg ... tttgctgcagAAAAGGACTGGGATGATATCAAGTTTGGTGTTGACAATAAAGTGGACTTTT