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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTACCAGCCCCTGAAGCTGTTGAATCTCCTGAAACTGTTGTAGCTGCAGAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttacacttgcttgtctgtgccatttgtttggtacatagacaagagagtaacattattttgtatatatatactttctagtcttctttcaaggttgcctaggagattgtatatgtttgcaatttcagtgattcattaatactgtccattagcagtttcatgatcattaaatgtataacatatgtgcag

Basic information

species Vitis vinifera
transcript Vv16s0050g01510.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712988|gb|EE088514.1|EE088514
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|71859342|gb|DT008397.1|DT008397
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|110733197|gb|EE109180.1|EE109180
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACNAAGAAGTGGTTGTCACCATATTTGCAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCAC-AAGAAGTGGTTGTCACCATATTTGCAA
EST: gi|29782866|gb|CB348559.2|CB348559
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|29783203|gb|CB349232.2|CB349232
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTCGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|110694395|gb|EE071465.1|EE071465
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|161712354|gb|FC061928.1|FC061928
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|110421576|gb|EC987874.1|EC987874
EST:     TAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: TAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|110686508|gb|EE064228.1|EE064228
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|32271506|gb|CD720665.1|CD720665
EST:     GAGAAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|46917631|gb|CN546960.1|CN546960
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|110729024|gb|EE105164.1|EE105164
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCA-GCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|28969441|gb|CB348474.1|CB348474
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|71863962|gb|DT013017.1|DT013017
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAG
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAG
EST: gi|71859797|gb|DT008852.1|DT008852
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGA
EST: gi|77581747|gb|DV219826.1|DV219826
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|110687406|gb|EE064790.1|EE064790
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|110693950|gb|EE070628.1|EE070628
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|110711614|gb|EE088295.1|EE088295
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|161711760|gb|FC058309.1|FC058309
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAAGAAGTGGTT
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAA-GAAGTGGTT
EST: gi|32249238|gb|CD715057.1|CD715057
EST:     GAGAAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|110732977|gb|EE108734.1|EE108734
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|110723197|gb|EE100235.1|EE100235
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|161718657|gb|FC067946.1|FC067946
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|110383861|gb|EC948264.1|EC948264
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAACCCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|110426741|gb|EC993160.1|EC993160
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
EST: gi|71857115|gb|DT006170.1|DT006170
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGC
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGC
EST: gi|71873209|gb|DT022264.1|DT022264
EST:     GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAG                         GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA
genomic: GAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttac ... atatgtgcagGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTACCAGCCCCTGAAGCTGTTGAATCTCCTGAAACTGTTGTAGCTGCAGAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGgtatggttacacttgcttgtctgtgccatttgtttggtacatagacaagagagtaacattattttgtatatatatactttctagtcttctttcaaggttgcctaggagattgtatatgtttgcaatttcagtgattcattaatactgtccattagcagtttcatgatcattaaatgtataacatatgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA