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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAACCTCACTTATTCCGGTTTGTTCCAAATGAGAAACAGgtaaatggtaattgtccctgcttgttgtatattagcattggttcaatattttgttgctcttgcag

Basic information

species Vitis vinifera
transcript Vv16s0050g01470.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G24090.1 (Glycine max), 5'ss of exon 4
GAAAAACCTCACTTATTCCGGTTTGTTCCAAATGAGAAACAGgtaaatggtaattgtccctgcttgttgtatattagca---ttggttcaatattttgttgctcttgcag------------------
|||||||||||||| |||| |||||||||||||||||| ||||||     || | ||   |  |||||| ||||   |    ||  ||  |        ||   ||  |                   
GAAAAACCTCACTTGTTCCAGTTTGTTCCAAATGAGAAGCAGgtat----tattagtgtttcattgttgcatatcttcgagttttatttgactgccatctgtatttataataaatacatccccaccag

upper sequence: Vv16s0050g01470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G29580.1 (Glycine max), 5'ss of exon 4
GAAAAACCTCACTTATTCCGGTTTGTTCCAAATGAGAAACAGgtaaatggtaattgtccctgcttgt-tgtatattagcattggttcaatattttgttgctcttgcag----------------
|||||||||||||| |||| |||||||||||||||||| ||||||  |  || || | | |  |||  | | |  | |   |  || | |   || ||  |  |                    
GAAAAACCTCACTTGTTCCAGTTTGTTCCAAATGAGAAGCAGgtat-tattagtttttcattgttgcatatcttctggttgtatttgactgccttcttatttataataaatactttcccgccag

upper sequence: Vv16s0050g01470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G62650.1 (Arabidopsis thaliana), 5'ss of exon 4
GAAAAACCTCACTTATTCCGGTTTGTTCCAAATGAGAAACAGgtaaatggta-attgtccctgcttgttgtatattagcattggttcaatattttgttgctcttgcag--------------
|| |||||||||||||| | ||||||||||||||||| |||||| | ||  | | |||  ||     |||| |  |  | ||| || | |   || |  ||                     
GAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGACAGgtcagtgtgacactgtgacttggatttgtttgctc-ctttgattaacttacttctaactgaaatgatttctgattcgcag