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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCACAGATCCAATCTCACGTGAGAATTATGAAAAGTATGGCCATCCTGATGGTAGGCAGgtaatgaatttccctatgataaggaaggacttgctttgatatttacctaaaaataaagaaactatttataagaaatcatgtttctgaaactgaatgtactatctgttgatgcag

Basic information

species Vitis vinifera
transcript Vv16s0050g01460.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G20400.1 (Glycine max), 5'ss of exon 5
CAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCACAGATCCAATCTCACGTGAGAATTATGAAAAGTATGGCCATCCTGATGGTAGGCAGgtaatgaatttccctatgataaggaaggacttgctttgatatttacctaaaaataaagaaactatttata-agaaatcatgtttctgaaactgaatgtactatctgttgatgcag
||| || || || |||| |||  | || |||||||| ||||| |||||||||||  | ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||   |   | | || ||||     |   | | |  ||| ||     |  | |  || || | | | | || || |||    || || |                    
CAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaa--cataaggttatggaaaatgctaagtggctcgttatctttttgtttacatgctgttgaaatatacatgatattt----aattgcag-------------------

upper sequence: Vv16s0050g01460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G08830.2 (Glycine max), 5'ss of exon 5
CAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCACAGATCCAATCTCACGTGAGAATTATGAAAAGTATGGCCATCCTGATGGTAGGCAGgtaatgaatttccctatgataaggaaggacttgctttgatatttacctaaaaataaagaaactatttataagaaatcatgtttctgaaactgaatgtactatctgttgatgcag
||| || || || |||| |||  | || |||||||| ||||| ||||||||||   | ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||     | |  || |  ||   |          | |  |||              ||| | |  |   ||||| |  |||||    ||| |  || | ||  || ||
CAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaacagacgactatgaaaaaatgcca--------agtggcctg------------ttatctttttgttttcatgctgttgaaat---atgcatgatattttattgtag

upper sequence: Vv16s0050g01460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G79940.3 (Arabidopsis thaliana), 5'ss of exon 5
CAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCACAGATCCAATCTCACGTGAGAATTATGAAAAGTATGGCCATCCTGATGGTAGGCAGgtaatgaatttccctatgataaggaaggacttgctttgatatttacctaaaaataaagaaactatttataagaaatcatgtttctgaaactgaatgtactatctgttgatgcag
 |||||||||||||||||||||||||| || || |||||| | || ||| || | || ||||| || | ||| |||||||| ||||| ||||| || ||||||| | ||    ||    |      | |  ||||    | ||        | | |  |  ||||| | |  |||  ||  || ||  |  | |                    
TAAATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGACTGATTCAGTATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGATGGCAGACAGgtaa-ggatacatctcctttcccttcgcatgtgctcccgtctt--------attgacaagcctattgagactaaaatattgttatgtgatcgcag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351014635|gb|FQ437637.1|FQ437637
EST:     CAATCTCACGTGAGAATTATGAAAAGTATGGCCATCCTGATGGTAGGCAG                         GGATTTCAAATGGGCATAGCTCTCCCTCAGTTCCTGTTAAACTTTGATGGA
genomic: CAATCTCACGTGAGAATTATGAAAAGTATGGCCATCCTGATGGTAGGCAGgtaatgaatt ... gttgatgcagGGATTTCAAATGGGCATAGCTCTCCCTCAGTTCCTGTTAAACTTTGATGGA
EST: gi|351040685|gb|FQ438229.1|FQ438229
EST:     CAATCTCACGTGAGAATTATGAAAAGTATGGCCATCCTGATGGTAGGCAG                         GGATTTCAAATGGGCATAGCTCTCCCTCAGTTCCTGTTAAACTTTGATGGA
genomic: CAATCTCACGTGAGAATTATGAAAAGTATGGCCATCCTGATGGTAGGCAGgtaatgaatt ... gttgatgcagGGATTTCAAATGGGCATAGCTCTCCCTCAGTTCCTGTTAAACTTTGATGGA
EST: gi|351023901|gb|FQ423324.1|FQ423324
EST:     CAATCTCACGTGAGAATTATGAAAAGTATGGACATCCTGATGGTAGGCAG                         GGATTTCAAATGGGCATAGCTCTCCCTCA
genomic: CAATCTCACGTGAGAATTATGAAAAGTATGGCCATCCTGATGGTAGGCAGgtaatgaatt ... gttgatgcagGGATTTCAAATGGGCATAGCTCTCCCTCA