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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCATCAATTCTTAGGAACCCAATCACTAGTGCTGCTGCATCTTCCTGGACTAACAGCAAACCTGCACAAACAGTTGGTTTGTCACATGTGGCAAAAGgttcatttatttatgtgttctgacttcactaacatttgtaaatttatagtttctgggctaaaatggatttacacataattaacattctagtcaatgtttttcag

Basic information

species Vitis vinifera
transcript Vv16s0050g01180.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351034613|gb|FQ457970.1|FQ457970
EST:     GACTAACAGCAAACCTGCACAAACAGTTGGTTTGTCACATGTGGCAAAAG                         GTGATATGAGATCTGCANGGCCAACAGTGCCTAATAATTGTTGCAGTAGCA
genomic: GACTAACAGCAAACCTGCACAAACAGTTGGTTTGTCACATGTGGCAAAAGgttcatttat ... tgtttttcagGTGATATGAGATCTGCAGGGCCAACAGTGCCTAATAATTGTTGCAGTAGCG
EST: gi|351022507|gb|FQ447029.1|FQ447029
EST:     GACTAACAGCAAACCTGCACAAACAGTTGGTTTGTCACATGTGGCAAAAG                         GTGATATGAGATCTGCAGGGCCAACAGTGCCTAATAATTGTTGCAGTAGCA
genomic: GACTAACAGCAAACCTGCACAAACAGTTGGTTTGTCACATGTGGCAAAAGgttcatttat ... tgtttttcagGTGATATGAGATCTGCAGGGCCAACAGTGCCTAATAATTGTTGCAGTAGCG
EST: gi|349832942|gb|FQ423064.1|FQ423064
EST:     GACTAACAGCAAACCTGCACAAACAGTTGGTTTGTCACATGTGGCAAAAG                         GTGATATGAGATCTGCAGGGCCAACAGTGCCTAATAATTGTTGCAGTAGCA
genomic: GACTAACAGCAAACCTGCACAAACAGTTGGTTTGTCACATGTGGCAAAAGgttcatttat ... tgtttttcagGTGATATGAGATCTGCAGGGCCAACAGTGCCTAATAATTGTTGCAGTAGCG
EST: gi|351013330|gb|FQ425035.1|FQ425035
EST:     GACTAACAGCAAACCTGCACAAACAGTTGGTTTGTCACATGTGGCAAAAG                         GTGATATGAGATCTGCAGGGCCAACAGTGCCTAATAATTGTTGCAGTAGCA
genomic: GACTAACAGCAAACCTGCACAAACAGTTGGTTTGTCACATGTGGCAAAAGgttcatttat ... tgtttttcagGTGATATGAGATCTGCAGGGCCAACAGTGCCTAATAATTGTTGCAGTAGCG