Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGATCGTGATGGGTATCGTGGAGGCCCTCGTGGCCCTCCAGGCGAGTTTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatatctctctcataagattagcattaaatatcggaaggtgtctatttctctatgcagtgcttcatcctagtttttagcatcaattaattgttgt...

Basic information

species Vitis vinifera
transcript Vv16s0050g01160.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 4
TGGTGATCGTGATGGGTATCGTGGAGGCCCTCGTGGCCCTCCAGGCGAGTTTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataa--tatctctctcataagattagcattaaatatcggaaggtgtctatttctctatgcagtgcttcatcctagtttttagcatcaattaattgttgt
||||||  | |||||||| ||||| || ||||||||  |||| || || ||||||||||| ||||| |||||||||||||| |||||||| || ||||||||||| |  ||  |  |  | |||  |  |||||  | |      |||||   |    |||        | |  ||   |   || |  |   || |    |
TGGTGACAGAGATGGGTACCGTGGTGGTCCTCGTGGTGCTCCTGGTGACTTTGGTGGTGAGAAGGGTGGAGCTCCTGCTGAGTTCCAGCCATCCTTTAGGgtaatcaactactttccctacaagtgtttcattat-tgttctgttgtgtcatgtagcttatttgacttgttacgctgaatacaag-acaagcaaaatccatt

upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 4
TGGTGATCGTGATGGGTATCGTGGAGGCCCTCGTGGCCCTCCAGGCGAGTTTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaat-aatatctctctcataagattagcatta-aatatcggaaggtgtctatttctctatgcagtgcttcatcctagtttttagcatcaattaattgttgt
||| || || ||||| || ||||| || ||||||||  | || || || ||||||||||| ||||| || |||||||| || |||||||| ||||| |||||||| |||   |    | ||  |||||  ||  | |||  || |   |  |  |   |||  | |    || |      |    ||| |  ||||||    
TGGAGACCGGGATGGCTACCGTGGTGGACCTCGTGGTGCGCCTGGTGATTTTGGTGGTGAGAAGGGTGGTGCTCCTGCAGAATTCCAGCCATCATTCAGGgtaatcaatcaattctgcctattattagtgtttcactatgtgaggagataaacatgattattgaatag--caactcgccatcctacataagctaattggaaa

upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G043737_T01 (Zea mays), 5'ss of exon 4
TGGTGATCGTGATGGGTATCGTGGAGGCCCTCGTGGCCCTCCAGGCGAGTTTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatatctctctcataagattagcattaaa---tatcggaaggtgtctatttctctatgcagtgcttca-tcctagtttttagcatcaattaattgttgt
||||||  | |||||||| ||||| || ||||||||  |||| || || |||||||| || ||| | |||||||||||||| |||||||| ||||| |||||||| |||     |   | |   | ||||  ||   |||      || |  |     ||     |   |||| |   | || |     |    |   | |   
TGGTGACAGGGATGGGTACCGTGGTGGTCCTCGTGGTGCTCCTGGTGACTTTGGTGGCGATAAGAGTGGAGCTCCTGCTGAGTTCCAGCCATCATTCAGGgtaatcatactcagccgttga---tggcatgcaattctattccttagttttgagcatactgaatggaaattcacttgcaattgtccatgtgttgtgcatataa-

upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G050925_T01 (Zea mays), 5'ss of exon 4
TGGTGATCGTGATGGGTATCGTGGAGGCCCTCGTGGCCCTCCAGGCGAGTTTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatatctctctcataagattagcattaaatatcggaaggtgtctatttctctatgcagtgcttcatcc-tagtttttagcatcaattaattgttgt
||| ||  | |||| ||| ||||| |||||||||||  |||| || || |||||||| || ||| | |||||||||||||| |||||||| || || |||||||  |||| | | |  |||    |   |   || |    |  | |     |  | |        | || |   | || ||    |    |   | | | 
TGGAGACAGGGATGAGTACCGTGGTGGCCCTCGTGGTGCTCCCGGTGACTTTGGTGGCGATAAGAGTGGAGCTCCTGCTGAGTTCCAGCCATCTTTCAGGgtaagcatatttgtgttttaatgccatgttcttattttcttactttttagcataccgagttgaaattccacctgcaattgttcatgtgttgtgcatatag-

upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G446960_T01 (Zea mays), 5'ss of exon 4
TGGTGATCGTGATGGGTATCGTGGAGGCCCTCGTGGCCCTCCAGGCGAGTTTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatatctctctcataagattagcattaaatatcggaaggtgtctatttctctatgcagtgcttcatcctagtt-tttagcatcaattaattgttgt----
||||||| | ||||| ||  | ||||| || |||||| ||||||| || ||||||||||| ||||| || |||||||| || ||||| || || |||||||||    | |       |  || |      || ||    |  ||      | | |  ||    | ||| |     ||| |  |||     | |||| || |    
TGGTGATAGGGATGGTTACAGAGGAGGTCCACGTGGCGCTCCAGGTGACTTTGGTGGTGATAAGGGTGGTGCTCCTGCAGATTTCCAACCATCTTTTAGGgta----tgttctagaaaccaggtcgcatctatatggttgc-ggcacagctgtttacattggtttcttaacttgcgttgtccagctcatttcaatttttttgcgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110376094|gb|EC941135.1|EC941135
EST:     GGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: GGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110696615|gb|EE072889.1|EE072889
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110400553|gb|EC967119.1|EC967119
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110416737|gb|EC982738.1|EC982738
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|51051467|gb|CO819071.1|CO819071
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110377465|gb|EC942530.1|EC942530
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|34320284|gb|CF373038.1|CF373038
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110382383|gb|EC939329.1|EC939329
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110715571|gb|EE093772.1|EE093772
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTANG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110700496|gb|EE078604.1|EE078604
EST:     TGGTGGTGACAAGGGAGGAGCTCCTGGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAAGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TGGTGGTGACAAGGGAGGAGCTCCTG-CTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|71868077|gb|DT017132.1|DT017132
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110702044|gb|EE080304.1|EE080304
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTANG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110373431|gb|EC937667.1|EC937667
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110416841|gb|EC982847.1|EC982847
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110703760|gb|EE080890.1|EE080890
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAAGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110367051|gb|EC930971.1|EC930971
EST:     CTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: CTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110398785|gb|EC965259.1|EC965259
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110690684|gb|EE068060.1|EE068060
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110417937|gb|EC984040.1|EC984040
EST:     GTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: GTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|87584273|gb|DY473501.1|DY473501
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTANG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|71872604|gb|DT021659.1|DT021659
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|34364255|gb|CF405840.1|CF405840
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110360451|gb|EC923562.1|EC923562
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|71870077|gb|DT019132.1|DT019132
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110363287|gb|EC926864.1|EC926864
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|77584540|gb|DV221341.1|DV221341
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110692204|gb|EE071178.1|EE071178
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110723368|gb|EE100598.1|EE100598
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAAGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|87584250|gb|DY473484.1|DY473484
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|83276421|gb|DV940429.1|DV940429
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|30320459|gb|CD003721.1|CD003721
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|29781884|gb|CB346698.2|CB346698
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGATTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|18458561|gb|BM436839.1|BM436839
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110722253|gb|EE098322.1|EE098322
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGGTTTGGTGCC
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGC-
EST: gi|32268119|gb|CD717278.1|CD717278
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|229418687|gb|GO652924.1|GO652924
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|83276434|gb|DV940442.1|DV940442
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110401412|gb|EC968022.1|EC968022
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110692508|gb|EE071834.1|EE071834
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
EST: gi|110383847|gb|EC948248.1|EC948248
EST:     TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGG                         GGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT
genomic: TTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatat ... atctctgcagGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTGATCGTGATGGGTATCGTGGAGGCCCTCGTGGCCCTCCAGGCGAGTTTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGgtaataatatctctctcataagattagcattaaatatcggaaggtgtctatttctctatgcagtgcttcatcctagtttttagcatcaattaattgttgt

- - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc