1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGCCCTACTTGATTGAAATCATGTATTCAAATCATGTTCAGATATCAAACCTTACATTGATCGATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAGgttgatcttctcttcaatttttttactttggctttatcttgaaacattcaattatcaatagcttgttttctcatacttctatgtgaaactgcag
species | Vitis vinifera |
transcript | Vv16s0050g01110.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTACATTGATCGATTCTCCATCATGGAATGTTCGTCCTGTTTATAGCAG AAATGTACTTGTTAAGGATCTGACGATCTTAGCACCCATCGATTCTCCTAAEST: gi|77586669|gb|DV222463.1|DV222463
genomic: CTTACATTGATCGATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAGgttgatcttc ... gaaactgcagAAATGTACTTGTTAAAGATCTGACGATCTTAGCACCCATCGATTCTCCTAA
EST: CTTACATTGATCGATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAG AAATGTACTTGTTAAAGATCTGACGATCTTAGCACCCATCGATTCTCCTAAEST: gi|351014648|gb|FQ437650.1|FQ437650
genomic: CTTACATTGATCGATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAGgttgatcttc ... gaaactgcagAAATGTACTTGTTAAAGATCTGACGATCTTAGCACCCATCGATTCTCCTAA
EST: TTACATTGATCGATTCTCCATCATGGAATGTTCATCCTGTTTATAGCCA- AAATGTACTTGGTAAAGATCTGAEST: gi|110698435|gb|EE075933.1|EE075933
genomic: TTACATTGATCGATTCTCCATCATGGAATGTTCATCCTGTTTATAGC-AGgttgatcttc ... gaaactgcagAAATGTACTTGTTAAAGATCTGA
EST: CTTACATTGATCGATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAG AAATGTACTTGTTAAAGATCTGACGATCTTAGCACCCATCGATTCTCCTAA
genomic: CTTACATTGATCGATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAGgttgatcttc ... gaaactgcagAAATGTACTTGTTAAAGATCTGACGATCTTAGCACCCATCGATTCTCCTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCCTACTTGATTGAAATCATGTATTCAAATCATGTTCAGATATCAAACCTTACATTGATCGATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAGgttgatcttctcttcaatttttttactttggctttatcttgaaacattcaattatcaatagcttgttttctcatacttctatgtgaaactgcag
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