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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTGTTCTGCTTAGCCGCTTATGCCATCCAAACATTGTGCAGTATTATGGATCTGAAACGgtcagctcttgtcttccagttcattttaatcattttatgattgtggccgttgtttagtttactgttttgtatttggcatgttctttattacattaattgt...

Basic information

species Vitis vinifera
transcript Vv16s0050g00770.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G30030.2 (Glycine max), 5'ss of exon 5
GAAATTGTTCTGCTTAGCCGCTTATGCCATCCAAACATTGTGCAGTATTATGGATCTGAAACGgtcagctcttgtcttccagttcattt--taatcattttatgattgtggccgttgtttagt--ttactgttttgtatttggcatgttctttattacattaattgt
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GAAATTACCTTGTTGAGCCGGTTACGACATCCAAATATTGTGCAGTATTATGGTTCTGAAACAgtaagctctccaattcctgtttctttctcagtctcctgtttacattagctgtttgtgagtgatcatggatttattttgggatttatctgcagactgccaa----