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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGTTGACCTCACCAGCCGTGCACTTGCTCGAATTATTGAGGGGAAAACTCCTGAGGAAATTCGTGAGACGTTTCATTTGCCTGATGATCTTACAGAGgtgtttgttggaaaaattcagagtctcaagattttgtctgcttcaatttctcatatagatttgttttttcccag

Basic information

species Vitis vinifera
transcript Vv16s0050g00720.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g01660.1 (Oryza sativa), 5'ss of exon 4
TTTGGTTGACCTCACCAGCCGTGCACTTGCTCGAATTATTGAGGGGAAAACTCCTGAGGAAATTCGTGAGACGTTTCATTTGCCTGATGATCTTACAGAGgtgtttgttggaaaaattcagagtctcaagattttgtctgcttcaatttctcatataga-tttgttttttcccag
 |||||||| || ||||| || |||||||||||||| ||||| || || || ||||||||||||||||| |  || |||||||| |||||  | ||||||||     | | |    | |  |   | |    |  |  ||  |  ||   |  | | ||  |||  ||    |||
ATTGGTTGATCTTACCAGTCGAGCACTTGCTCGAATAATTGAAGGAAAGACACCTGAGGAAATTCGTGATATTTTCCATTTGCCAGATGACTTAACAGAGgtacaaatcgcatgtctgcttatagtta----tcagcatgtattgatgcttactgtggaacttgcattcattcag

upper sequence: Vv16s0050g00720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G055785_T01 (Zea mays), 5'ss of exon 4
TTTGGTTGACCTCACCAGCCGTGCACTTGCTCGAATTATTGAGGGGAAAACTCCTGAGGAAATTCGTGAGACGTTTCATTTGCCTGATGATCTTACAGAGgtgtttgttggaaaaattcagagtctcaagattttgtctgcttcaat--ttctcatatagatttgttttttcccag
  | ||||| || ||  |||| || ||||||||||| ||||| || || || ||||||||||||||||| |  || ||||| || |||||| | ||||||||     | |      |||      |  |||| |||  |  || |||  || |  |  | | ||   |   | |||
ACTTGTTGATCTTACTGGCCGAGCGCTTGCTCGAATCATTGAAGGAAAGACACCTGAGGAAATTCGTGACATTTTCCATTTACCAGATGATTTAACAGAGgt-----tagagtgttttctatagttttagatattgattcattaaatacttattgtcaaaacttacatccactcag

upper sequence: Vv16s0050g00720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G25090.1 (Glycine max), 5'ss of exon 3
TTTGGTTGACCTCACCAGCCGTGCACTTGCTCGAATTATTGAGGGGAAAACTCCTGAGGAAATTCGTGAGACGTTTCATTTGCCTGATGATCTTACAGAGgtgtttgttgg-aaaaattcagagtctcaagattttgtctgcttcaatttctcatatagatttgt-tttttcccag
|||||||||||| |||||||| ||||||||||| |||||||| || |||||||||||||| |||||||| || |||||||||||||||||||| || ||||||| || ||  |   |    ||| ||  |  | |   |      | ||  | || || ||| |  | ||| ||||
TTTGGTTGACCTGACCAGCCGAGCACTTGCTCGGATTATTGAAGGAAAAACTCCTGAGGAGATTCGTGAAACATTTCATTTGCCTGATGATCTCACTGAGgtgtgtgatgatagcgaaagtgagcctttaagtctg--caatcatatttctttatttacattaggatctttgccag

upper sequence: Vv16s0050g00720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G30080.2 (Glycine max), 5'ss of exon 3
TTTGGTTGACCTCACCAGCCGTGCACTTGCTCGAATTATTGAGGGGAAAACTCCTGAGGAAATTCGTGAGACGTTTCATTTGCCTGATGATCTTACAGAGgtgtttgttggaaaaattcagagtctcaagattttgtctgcttcaatttctcatatagatttgt-tttttcccag
|||||||||||| |||||||| ||||||||||| ||||| || || |||||||||||||| |||||||| || |||||||||||||||||||| || ||||||| || ||  |           |   | | | || |     |  ||  | || || |||||  | |||  |||
TTTGGTTGACCTGACCAGCCGAGCACTTGCTCGGATTATAGAAGGAAAAACTCCTGAGGAGATTCGTGAAACATTTCATTTGCCTGATGATCTCACTGAGgtgtgtgatgatagctaaagtgacccttaaaatctg-caatcacgtttctttatttacatttggatctttgacag