1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGAAATGAAAGAAACCGAAGAAGAGGTTGCTAGATGGAGGGAAGCTTGTGAATTAGAAGTGGAAGCAGGAAAAAATGTTGTTGAAGAACGTGATAAAGTGgtaaaagtttatggatctctttgacagaattgtttcttaaatttatcagcaatcgaaattaaaacgctaacatagttgctgtctcttcag
species | Vitis vinifera |
transcript | Vv16s0050g00680.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAGAAGTGGAAGCAGGAAAAAATGTTGTTGAAGAACGTGATAAAGTG ACTCTAATTCTGAAACAAGAGTTGGAGAAGACAAAGACGGCTTTGGACATAEST: gi|110385205|gb|EC949708.1|EC949708
genomic: TAGAAGTGGAAGCAGGAAAAAATGTTGTTGAAGAACGTGATAAAGTGgtaaaagttt ... gtctcttcagACTCTAATTCTGAAACAAGAGTTGGAGAAGACAAAGACGGCTTTGGACATA
EST: AATTAGAAGTGGAAGCAGGAAAAAATGTTGTTGAAGAACGTGATAAAGTG ACTCTAATTCTGAAACAAGAGTTGGAGAAGACAAAGACGGCTTTGGACATA
genomic: AATTAGAAGTGGAAGCAGGAAAAAATGTTGTTGAAGAACGTGATAAAGTGgtaaaagttt ... gtctcttcagACTCTAATTCTGAAACAAGAGTTGGAGAAGACAAAGACGGCTTTGGACATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAATGAAAGAAACCGAAGAAGAGGTTGCTAGATGGAGGGAAGCTTGTGAATTAGAAGTGGAAGCAGGAAAAAATGTTGTTGAAGAACGTGATAAAGTGgtaaaagtttatggatctctttgacagaattgtttcttaaatttatcagcaatcgaaattaaaacgctaacatagttgctgtctcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC