Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattctttattcattttgtagaagggaatttcagccctacattcattttcttagaattcatattgttatttccattttctgtgaaaacaggggag...

Basic information

species Vitis vinifera
transcript Vv16s0050g00080.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G31290.2 (Glycine max), 5'ss of exon 3
AGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaatt--ctttatt-----------cattttgtagaagggaatttcagccctacattcattttc----ttagaattcatattgttatttc--cattttctgtgaaaacaggggag----------------------------------------
 ||||| |||||||| ||  ||  |   |||||||| |||||| | |||||  ||||||| ||||| |||||||||||||| ||| |||||   || |||           ||| || ||   |   ||||    |   | |  | ||||     | |  ||| | |  || ||||  ||||   | ||   | || | |                                         
GGCTCACAAAAAGCTTTCATCCGTTTCTGCATGGGAAAACAGCAAGAAAGCTGCTGTGGAGGCTGACCTGAAAAAGATTGAAgtaagaattaatttcattagtaattctatcatgttttatgtgttcattttcttctatcgtgtaatttcaaatcttggtttcttgtgattctttctgcattgaatctggccaaagagaaaaagaaattaaagttcactttttattttttgtatctgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110397997|gb|EC964042.1|EC964042
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|349827462|gb|FQ422330.1|FQ422330
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110701591|gb|EE079339.1|EE079339
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|351020365|gb|FQ445972.1|FQ445972
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110692641|gb|EE072119.1|EE072119
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110374943|gb|EC939889.1|EC939889
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110394019|gb|EC958374.1|EC958374
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|56409507|gb|CX017759.1|CX017759
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|29783949|gb|CB344101.2|CB344101
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|37186543|gb|CF605896.1|CF605896
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAG
EST: gi|71889696|gb|DT038751.1|DT038751
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|30328116|gb|CD011378.1|CD011378
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|77579827|gb|DV218793.1|DV218793
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|33406229|gb|CF211856.1|CF211856
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|27755276|gb|CB036031.1|CB036031
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110366193|gb|EC929937.1|EC929937
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|33406137|gb|CF211764.1|CF211764
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110380609|gb|EC945888.1|EC945888
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|32246797|gb|CD712616.1|CD712616
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|71885693|gb|DT034748.1|DT034748
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|28965124|gb|CB344157.1|CB344157
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|30133067|gb|CB918406.1|CB918406
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|56409736|gb|CX017988.1|CX017988
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110416964|gb|EC982982.1|EC982982
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|71872560|gb|DT021615.1|DT021615
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110693803|gb|EE070355.1|EE070355
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|32247111|gb|CD712930.1|CD712930
EST:     GGGAGAACAGCCAAAAAGCATCTATGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|351057040|gb|FQ448557.1|FQ448557
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|352795758|gb|FQ480346.1|FQ480346
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|351033526|gb|FQ446992.1|FQ446992
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110708527|gb|EE086168.1|EE086168
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110422273|gb|EC988591.1|EC988591
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|351019268|gb|FQ429428.1|FQ429428
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110418793|gb|EC984969.1|EC984969
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|27581608|gb|CB004303.1|CB004303
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|351023530|gb|FQ432913.1|FQ432913
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|27580860|gb|CB003555.1|CB003555
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110412405|gb|EC978153.1|EC978153
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|71858022|gb|DT007077.1|DT007077
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|351020250|gb|FQ445857.1|FQ445857
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|30327444|gb|CD010706.1|CD010706
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
EST: gi|110414270|gb|EC980097.1|EC980097
EST:     GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG                         GAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG
genomic: GGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattc ... tgtatttcagGAAAATTTGGAGAGGAAGAAGGCAGAATATGTGGAGAAGATGAAAAACAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAGgtaggaattctttattcattttgtagaagggaatttcagccctacattcattttcttagaattcatattgttatttccattttctgtgaaaacaggggag

- - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaca